Kingdom mismatches for new API vs current GBIF API

[djtfmartin]

This is issue for tracking Kingdom changes for matches with the new api.

V=Verbatim classification
C=Current GBIF API
P=New API matching

1) Globorotalia menardii (dOrbigny) - Improvement !

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V				Foraminiferida		Globorotalia	menardii		Globorotalia menardii (dOrbigny)
C	Animalia					Rotalia	Rotalia menardii	Rotalia menardii Parker, Jones & Brady, 1865	Globorotalia menardii (Parker et al., 1865)
P	Chromista	Foraminifera	Globothalamea	Rotaliida	Globorotaliidae	Globorotalia	Globorotalia menardii		Globorotalia menardii (d'Orbigny, 1865)

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29
• CURRENT https://api.gbif.org/v1/species/match2?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29

2) Protoperidinium + Peridinium - Unclear if this is correct, but mirrors CLB

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V	Protoctista								Protoperidinium + Peridinium	Genre
C	Protozoa					Protoperidinium		Protoperidinium Stokes, 1888	Protoperidinium Stokes, 1888
P	Chromista	Myzozoa	Dinophyceae	Peridiniales	Protoperidiniaceae	Protoperidinium			Protoperidinium Bergh, 1881

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?kingdom=Protoctista&rank=Genre&verbatimRank=Genre&scientificName=Protoperidinium+%2B+Peridinium
• CURRENT https://api.gbif.org/v1/species/match2?kingdom=Protoctista&rank=Genre&verbatimRank=Genre&scientificName=Protoperidinium+%2B+Peridinium
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?kingdom=Protoctista&rank=Genre&verbatimRank=Genre&scientificName=Protoperidinium+%2B+Peridinium

3) Cephaleuros - CHECK - presume low confidence match on Cephaleuros, snapping to higher taxon

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V	Fungi				Trentepholiaceae	Cephaleuros			Cephaleuros
C	Plantae	Chlorophyta	Ulvophyceae	Trentepohliales	Trentepohliaceae	Cephaleuros		Cephaleuros Kunze ex E.M.Fries, 1832	Cephaleuros Kunze ex E.M.Fries, 1832
P	Fungi								Fungi

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?kingdom=Fungi&family=Trentepholiaceae&genus=Cephaleuros&scientificName=Cephaleuros
• CURRENT https://api.gbif.org/v1/species/match2?kingdom=Fungi&family=Trentepholiaceae&genus=Cephaleuros&scientificName=Cephaleuros
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?kingdom=Fungi&family=Trentepholiaceae&genus=Cephaleuros&scientificName=Cephaleuros

4) Eutintinnus lusus-undae (Entz, 1885) - CHECK - presume low confidence match on Cephaleuros, snapping to higher taxon

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V	Animalia								Eutintinnus lusus-undae (Entz, 1885)
C	Chromista	Ciliophora	Oligotrichea	Choreotrichida	Eutintinnidae	Eutintinnus		Eutintinnus Kofoid & Campbell, 1939	Eutintinnus Kofoid & Campbell, 1939
P	Animalia								Animalia

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?kingdom=Animalia&scientificName=Eutintinnus+lusus-undae+%28Entz%2C+1885%29&author=%28Entz%2C+1885%29
• CURRENT https://api.gbif.org/v1/species/match2?kingdom=Animalia&scientificName=Eutintinnus+lusus-undae+%28Entz%2C+1885%29&author=%28Entz%2C+1885%29
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?kingdom=Animalia&scientificName=Eutintinnus+lusus-undae+%28Entz%2C+1885%29&author=%28Entz%2C+1885%29

5) Cystophora moniliformis - This looks very wrong, but the species isnt in Backbone, it is in WoRMS

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V	Plantae				Cystoseiraceae	Cystophora			Cystophora moniliformis	species
C	Chromista	Ochrophyta	Phaeophyceae	Fucales	Sargassaceae	Cystophora		Cystophora J.Agardh, 1841	Cystophora J.Agardh, 1841
P	Fungi	Ascomycota				Voglinoana		Voglinoana O.Kuntze, 1891	Cystophora Rabenhorst, 1844

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?kingdom=Plantae&family=Cystoseiraceae&genus=Cystophora&rank=species&verbatimRank=species&scientificName=Cystophora+moniliformis&author=%28Esper%29+Womersley+%26+Nizam.
• CURRENT https://api.gbif.org/v1/species/match2?kingdom=Plantae&family=Cystoseiraceae&genus=Cystophora&rank=species&verbatimRank=species&scientificName=Cystophora+moniliformis&author=%28Esper%29+Womersley+%26+Nizam.
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?kingdom=Plantae&family=Cystoseiraceae&genus=Cystophora&rank=species&verbatimRank=species&scientificName=Cystophora+moniliformis&author=%28Esper%29+Womersley+%26+Nizam.

6) Ulva spec. - this matching is the same as CLB, but differs to current GBIF API

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V	Animalia				Ulvaceae				Ulva spec.	aggregate species
C	Animalia	Arthropoda	Insecta	Lepidoptera	Hesperiidae	Sarangesa		Sarangesa Moore, 1881	Ulva Lindsey, 1925
P	Plantae	Chlorophyta	Ulvophyceae	Ulvales	Ulvaceae	Ulva	Ulva		Ulva spec Areschoug

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?kingdom=Animalia&family=Ulvaceae&rank=aggregate+species&verbatimRank=aggregate+species&scientificName=Ulva+spec.
• CURRENT https://api.gbif.org/v1/species/match2?kingdom=Animalia&family=Ulvaceae&rank=aggregate+species&verbatimRank=aggregate+species&scientificName=Ulva+spec.
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?kingdom=Animalia&family=Ulvaceae&rank=aggregate+species&verbatimRank=aggregate+species&scientificName=Ulva+spec.

7) Triastrum - this matching is the same as CLB, but differs to current GBIF API

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V			Polycystinea	Spumellaria	Spongodiscidae	Triastrum			Triastrum	genus
C	Chromista		Polycystina	Spumellaria	Myelastridae	Triastrum		Triastrum Cleve, 1902	Triastrum Cleve, 1902
P	Protozoa	Sarcomastigophora				Triastrum			Triastrum

• NEW http://backbonebuild-vh.gbif.org:9100/species/match2?class=Polycystinea&order=Spumellaria&family=Spongodiscidae&genus=Triastrum&rank=genus&verbatimRank=genus&scientificName=Triastrum
• CURRENT https://api.gbif.org/v1/species/match2?class=Polycystinea&order=Spumellaria&family=Spongodiscidae&genus=Triastrum&rank=genus&verbatimRank=genus&scientificName=Triastrum
• CLB https://api.checklistbank.org/dataset/53147/match/nameusage?class=Polycystinea&order=Spumellaria&family=Spongodiscidae&genus=Triastrum&rank=genus&verbatimRank=genus&scientificName=Triastrum

[djtfmartin]

A lot of the mismatches are fixed with the changes in #1316.
The only difference now is the matching of Globorotalia menardii which is an improvement.

	kingdom	phylum	class	order	family	genus	species	acceptedScientificName	scientificName	rank	scientificNameAuthorship
V				Foraminiferida		Globorotalia	menardii		Globorotalia menardii (dOrbigny)
C	Animalia					Rotalia	Rotalia menardii	Rotalia menardii Parker, Jones & Brady, 1865	Globorotalia menardii (Parker et al., 1865)
P	Chromista	Foraminifera	Globothalamea	Rotaliida	Globorotaliidae	Globorotalia	Globorotalia menardii		Globorotalia menardii (d'Orbigny, 1865)

• NEW_API http://localhost:8080/species/match2?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29
• GBIF_API https://api.gbif.org/v1/species/match2?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29
• CLB_API https://api.checklistbank.org/dataset/53147/match/nameusage?order=Foraminiferida&genus=Globorotalia&species=menardii&scientificName=Globorotalia+menardii+%28dOrbigny%29&author=%28dOrbigny%29