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I'm starting to look more closely at some actual wdl files to understand that end of things.
In testWorkflows/localBatchFileScatter, there is a local sample.batchfile.tsv file, but it's not being used.
The parse.inputs.json instead points to a copy of sample.batchfile.tsv here: /fh/fast/paguirigan_a/pub/ReferenceDataSets/workflow_testing_data/WDL/batchFileScatter /sample.batchfile.tsv, which uses files hosted on S3 rather than on /fh/fast
I think that's not what you intend - I'm guessing this workflow won't work for people who haven't got their AWS credentials set up: does that make sense?
Janet
The text was updated successfully, but these errors were encountered:
hey Amy,
I'm starting to look more closely at some actual wdl files to understand that end of things.
In
testWorkflows/localBatchFileScatter
, there is a localsample.batchfile.tsv
file, but it's not being used.The
parse.inputs.json
instead points to a copy ofsample.batchfile.tsv
here:/fh/fast/paguirigan_a/pub/ReferenceDataSets/workflow_testing_data/WDL/batchFileScatter /sample.batchfile.tsv
, which uses files hosted on S3 rather than on/fh/fast
I think that's not what you intend - I'm guessing this workflow won't work for people who haven't got their AWS credentials set up: does that make sense?
Janet
The text was updated successfully, but these errors were encountered: