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Failed to install GLM3r #21

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TheMaskou opened this issue Nov 1, 2021 · 6 comments
Open

Failed to install GLM3r #21

TheMaskou opened this issue Nov 1, 2021 · 6 comments

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@TheMaskou
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TheMaskou commented Nov 1, 2021 •
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Hi,

I'm simply trying to install package's GLM3r but I can't even differents ways used and tried... I'm sorry if it's seems so simple for all of you but I'm beginner and I'm blocking...

So, I'm using 4.1.1 R version and I'm tried to install the package with differents codes :

library(devtools)
install_github(repo = 'GLEON/GLM3r', force = TRUE)

library("devtools")
devtools::install_github("GLEON/GLM3r")

But a same error message is happening :

devtools::install_github("GLEON/GLM3r")
Downloading GitHub repo GLEON/GLM3r@HEAD
Error: Failed to install 'GLM3r' from GitHub:
create process 'C:/PROGRA1/R/R-411.1/bin/x64/Rcmd.exe' (system error 267, Nom de répertoire non valide.
) @win/processx.c:1040 (processx_exec)

I'm also tried to use 3.6.2 R version but 'rcmdcheck' and 'sessioninfo' dependencies are not available for package 'devtools' and it's impossible to install them too. It's globally a sames error messages for them, e.g install.packages("sessioninfo") :

install.packages("sessioninfo")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:

https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘D:/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
also installing the dependency ‘cli’

There are binary versions available but the source versions are later:
binary source needs_compilation
cli 2.5.0 3.1.0 TRUE
sessioninfo 1.1.1 1.2.0 FALSE

Binaries will be installed
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.6/cli_2.5.0.zip'
Content type 'application/zip' length 534931 bytes (522 KB)
downloaded 522 KB

package ‘cli’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in
C:\Users\Max¤µ\AppData\Local\Temp\RtmpWqE9wL\downloaded_packages
installing the source package ‘sessioninfo’

trying URL 'https://cran.rstudio.com/src/contrib/sessioninfo_1.2.0.tar.gz'
Content type 'application/x-gzip' length 171167 bytes (167 KB)
downloaded 167 KB

  • installing source package 'sessioninfo' ...
    ** package 'sessioninfo' correctement décompressé et sommes MD5 vérifiées
    ** using staged installation
    ** R
    ** byte-compile and prepare package for lazy loading
    Error in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) :
    namespace 'cli' 2.5.0 is being loaded, but >= 3.1.0 is required
    Calls: ... namespaceImportFrom -> asNamespace -> loadNamespace
    Exécution arrêtée
    ERROR: lazy loading failed for package 'sessioninfo'
  • removing 'D:/Documents/R/win-library/3.6/sessioninfo'
    Warning in install.packages :
    installation of package ‘sessioninfo’ had non-zero exit status

The downloaded source packages are in
‘C:\Users\Max¤µ\AppData\Local\Temp\RtmpWqE9wL\downloaded_packages’

Same complications for "Rtools" package who his version is out of bounds (necessary package for "devtools") :

install.packages("Rtools")
WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:

https://cran.rstudio.com/bin/windows/Rtools/
Installing package into ‘D:/Documents/R/win-library/3.6’
(as ‘lib’ is unspecified)
Warning in install.packages :
package ‘Rtools’ is not available (for R version 3.6.2)

av <- available.packages(filters=list())
av[av[, "Rtools"] == pkg, ]
Error in av[, "Rtools"] : subscript out of bounds
View(av)

Then, I even can't install devtools's package and even with that I don't know at all if it will be possible after to install from github the GLM3r package ...

If ever you can help me thank you verry verry much...

Max
@robertladwig
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Hi Max,

Thanks for the GLM3r issue report. Quick question: Did you try installing Rtools for Windows using https://cran.rstudio.com/bin/windows/Rtools/?

Cheers,
Robert

@TheMaskou
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TheMaskou commented Nov 1, 2021 via email •
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@robertladwig
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But when you try to reinstall GLM3r using

require("devtools")
devtools::install_github("GLEON/GLM3r")

you still get:

WARNING: Rtools is required to build R packages but is not currently installed. Please download and install the appropriate version of Rtools before proceeding:
?

@TheMaskou
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TheMaskou commented Nov 1, 2021 via email •
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@robertladwig
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Related to your problems with R 4.1.1 and the working Rtools, it seems this problem is very Windows-specific (see https://community.rstudio.com/t/install-github-system-error-267-the-directory-name-is-invalid/107145, https://stackoverflow.com/questions/67975277/error-windows-cant-find-c-progra1-check-the-spelling-and-try-again and https://stackoverflow.com/questions/68400661/r-unable-to-install-packages-from-github-system-error-267-win-processx-c1040/68408378#68408378). I'd suggest trying the approaches outlined in the last link, i.e.

`Sys.setenv(R_REMOTES_STANDALONE="true")

remotes::install_github("GLEON/GLM3r")`

But please note that I don't currently have access to any Windows machine to try it myself, and I am unsure if changing the environmental setting is worth it (see code above).

@TheMaskou
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It working perfectly !!!

I would like to thank you warmly. Many thanks for your answers and your work. Infinitely!
I wish you a good continuation and the best. Thanks a lot for your reactivity and your skills.

Max

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@robertladwig @TheMaskou