README.md

Welcome to the web page for the 33rd Project Week!

The 34rd NA-MIC Project Week was held during the week of January 20-24, 2020 in Las Palmas, Gran Canaria, Spain.

Please read about our experience in running these events since 2005: Increasing the Impact of Medical Image Computing Using Community-Based Open-Access Hackathons: the NA-MIC and 3D Slicer Experience.

Photo Album

This is our third Project Week in Las Palmas. Google Photos album

33 PW Winter NA-MIC in the media

Logistics

• Dates: January 20-24, 2020.

• Location: Las Palmas, Gran Canaria, Spain

• Discourse Forum: Please ask on discourse forum if you have questions.

• Slack Channel: Invite Link

• Venue and Hotel Information

• Updates

• ERASMUS mobility information

• Frequently Asked Questions

• REGISTRATION: Register here. Registration Fee: €350.

Local Organizing Committee Host: Juan Ruiz-Alzola, PhD, Professor of Imaging Technologies, director of the Grupo de Tecnología Médica y Audiovisual (GTMA), Instituto Universitario de Investigaciones Biomédicas y Sanitarias (IUIBS), Universidad de Las Palmas de Gran Canaria (ULPGC) Email Local Organizing Committee: Technical Topics: Maria Dolores Afonso Suarez Administrative Topics: Asmaa Skareb

Program Calendar

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How to add this calendar to your own?

Projects (How to add a new project?)

Segmentation

• High Resolution Brain Segmentation (Sylvain Bouix, Jarret Rushmore, Nikos Makris, Kyle Sunderland, Andras Lasso)

• Open Anatomy: glTF and metadata export (anatomy atlas, diffusion, etc) (Andras Lasso, Mike Halle, Steve Pieper, Kyle Sunderland)

• Software for Annotation and Anatomy (AEVA) (Sam Horvath)

Web and cloud

• OHIF / Slicer Bridge (Steve Pieper, Andras Lasso, James Petts, Mark Asselin, Kyle Sunderland, Csaba Pinter)

• VTK.js Multi-volume Volume Rendering (Erik Ziegler, James Petts, Jean-Christophe Fillion-Robin, Steve Pieper, Ken Martin (remote))

• Tool framework for react-vtkjs-viewport? (James A. Petts, Danny Brown, Erik Ziegler)

• dicomweb-server (Emel Alkim, Steve Pieper, Hans Meine, Erik Ziegler)

• OHIF and IDC, cancer images in the cloud (Steve Pieper, Ron Kikinis, Erik Ziegler, James A. Petts)

• KHEOPS and OHIF, secure interface between KHEOPS and OHIF (Joël Spaltenstein, Nicolas van Dooren, Erik Ziegler, James A. Petts)

• Open Anatomy Browser in vtkjs, a reimplementation of the Open Anatomy Browser (Mike Halle and friends)

• ePad / Slicer Bridge and Segmentation Plugin (Emel Alkim, Steve Pieper)

• Evaluation of ModelHub.ai (Hans Meine)

IGT

• Ultrasound navigation training system for breast biopsy (Guillermo Valentín Socorro-Marrero, José-Carlos Ruiz-Luque, Andras Lasso, Md. Nurul Karim, Miguel Angel Rodriguez-Florido, Juan Ruiz-Alzola)

• Slicer to Unity Connection (Thomas Muender, Anke Reinschluessel, Thomas Mildner, Adam Rankin, Steve Pieper, Andras Lasso)

• Slicer iMSTK Integration (Sam Horvath)

• Arduino Slicer (Paolo Zaffino, Andras Lasso, Mike Halle, Steve Pieper, Attila Nagy, Badiaa Ait Ahmed, Nayra Pumar Carreras)

• NIRS device OpenIGTLink interface (David Díaz Martín, Francisco Marcano Serrano, José Luis González Mora, Juan Ruiz-Alzola)

Clinical applications

• BabySteps club foot treatment (Pooneh Roshanitabrizi, Hadi Fooladi Talari, Steve Pieper)

• Integration of Diabetic Foot Segmentation Algorithm based on Deep Learning (Abián Hernández, Juan Ruiz...)

• Customized interface for diabetic foot extension (Jose-Carlos Ruiz-Luque, Sara González, Juan Ruiz)

• Synthetic CT evaluation (Paolo Zaffino)

• NorMIT-Plan (Rafael Palomar)

• Brain white matter of social cognition in schizophrenia and healthy (Zora Kikinis, Nikos Makris)

• Improuving StereoPlan STIM Slicer module for SEEG Procedures. Sara Fernandez Vidal, ICM)

• Adapt an already existing workflow in maxillofacial reconstructive surgery to Slicer (Attila Nagy, András Lasso, Steve Pieper and whoever is interested)

• Sarcopenia Quantification in Abdominal MR Images (Hans Meine, Mike Halle, Ron Kikinis)

Education

• 3DSlicer Training programs (Babacar Diao, Ahmedou Moulaye Idriss, Yahya Tfeil, Mohamed Septy, Ainina Ndiaye, Siham Alaoui, Mouhcine Madani, Otman Aghzout, Badiaa Ait Ahmed, GTMA group)

• Customization of user interfaces for dissemination applications based on 3D Slicer (Guillermo Valentín Socorro-Marrero, Nayra Pumar Carreras, José-Carlos Ruiz-Luque, Abián Hernández-Guedes, Juan Ruiz-Alzola)

• Anatomical Atlases Senegal (Babacar Diao, Ainina Ndiaye, Siham Alaoui, Mouhcine Madani, Otman Aghzout, Badiaa Ait Ahmed, Nayra Pumar Carreras, Juan Ruiz Alzola)

• Anatomical Atlases Mauritania (Dada Lebchir, Ahmedou Moulaye Idriss, Yahya Tfeil, Mohamed Septy, Haythem Guermazi, Oubeida Aryan, Raia Sidi Aly, Mohamed Bamba, Yahya Abatna, Mariem Isselmou, Mohamed Aly Dedew, Siham Alaoui, Mouhcine Madani, Otman Aghzout, Badiaa Ait Ahmed, María Dolores Afonso Suárez, Juan Ruiz Alzola)

Astronomy (Yep!)

• SlicerAstro Update (Davide Punzo)

Infrastructure

• Slicer5 Implementation (Andras, Jc, Steve, Csaba, ...)

• Transition to GitHub as authoritative version control system (JC, Andras, Steve)

• CTK DICOM database and browser improvements (Marco Nolden, Andras Lasso, Steve Pieper, Jc)

• Slicer on Android (Attila Nagy, Steve Pieper and whoever is interested)

• Location Sensitive Hashing for web-scale image indexing (Sandy Wells, Steve Pieper)

• Whitematteranalysis To Python3 (Scott Lill, Steve Pieper, Sandy Wells, Yang Song, Tom Cai, Fan Zhang, Lauren O'Donnell)

• Optimal Spherical Harmonics filter weights (Hans Knutsson, Carl-Fredrik Westin)

• SlicerAIGT (Gabor Fichtinger, Andras Lasso, Kyle Sunderland)

• MEVIS Draw Tests & DICOM SEG Interoperability (Hans Meine, Steve, Erik, James, Marco)

• Build latest VTK with Slicer (Csaba, Jc, Andras)

Breakout sessions

• Slicer 5 (Sam Horvath, Andras Lasso, JC, Csaba Pinter, Steve Pieper, all welcome)

• Slicer VR (Adam Rankin, Csaba Pinter, JC, Andras Lasso, all welcome)

Registrants

Do not add your name to this list below. It is maintained by the organizers based on your paid registration. Click here to register.

List of registered participants so far (names will be added here after processing registrations):

1. Tina Kapur (@tkapur)([email protected]) - Brigham and Women’s Hospital and Harvard Medical School - USA
2. Marco Nolden ([email protected]) - German Cancer Research Center (DKFZ) - Germany
3. Hadi Fooladi Talari ([email protected]) - Children's National Hospital - USA
4. Pooneh Roshanitabrizi ([email protected]) - Children's National Hospital - USA
5. Ron Kikinis (@rkikinis) - Brigham and Women's Hospital and Harvard Medical School - USA
6. Zora Kikinis ([email protected]) - Brigham and Women's Hospital - USA
7. Sylvain Bouix ([email protected]) - Brigham and Women's Hospital - USA
8. Richard Rushmore ([email protected]) - Brigham and Women's Hospital - USA
9. Juan Ruiz Alzola (@jruizalz)([email protected]) - University of Las Palmas de Gran Canaria / Instituto de Astrofísica de Canarias - Spain
10. José-Carlos Ruiz-Luque (@carlos-luque)([email protected]) - Instituto de Astrofísica de Canarias - Spain
11. Guillermo Valentín Socorro-Marrero (@gvsocorro)([email protected]) - University of Las Palmas de Gran Canaria - Spain
12. Abián Hernández Guedes (@SolidusAbi)([email protected]) - University of Las Palmas de Gran Canaria - Spain
13. Nayra Pumar Carreras ([email protected]) - University of Las Palmas de Gran Canaria - Spain
14. Gabor Fichtinger ([email protected]) - Queen’s University - Canada
15. Davide Punzo, (@punzo)([email protected]) - Freelancer - France
16. Jean-Christophe Fillion-Robin (@jcfr)([email protected]) - Kitware Inc. - USA
17. Steven Pieper (@pieper)([email protected]) - Isomics Inc. - USA
18. Asmaa Skareb ([email protected]) - University of Las Palmas de Gran Canaria - Spain
19. Anke Verena Reinschluessel ([email protected]) - University of Bremen, Digital Media Lab - Germany
20. Thomas Muender ([email protected]) - University of Bremen - Germany
21. Paolo Zaffino (@pzaffino)([email protected]) - Magna Graecia University - Italy
22. Alexandra Golby ([email protected]) - Brigham and Women’s Hospital and Harvard Medical School - USA
23. Sara González ([email protected]) - Instituto de Astrofísica de Canarias - Spain
24. Mark Asselin ([email protected]) - ACMIT Gmbh / Queen’s University - Canada
25. Csaba Pintér (@cpinter)([email protected]) - Ebatin S.L. - Spain
26. Andras Lasso (@lassoan)([email protected]) - Queen’s University - Canada
27. Hans Meine (@hmeine) ([email protected]) - University of Bremen - Germany
28. Rafael Palomar ([email protected]) - Oslo University Hospital - Norway
29. Thomas Mildner ([email protected]) - University of Bremen - Germany
30. James Petts ([email protected]) - Ovela Solutions LTD - UK
31. Sara Fernández Vidal ([email protected]) - ICM BRain & Spine Institute - France
32. Sonia Pujol ([email protected]) - Brigham and Women's Hospital and Harvard Medical School - USA
33. Michael Halle (@mhalle)([email protected]) - Brigham and Women's Hospital and Harvard Medical School - USA
34. Babacar Diao ([email protected]) - Ecole Militaire de Santé Dakar -Senegal
35. Ainina Ndiaye ([email protected]) - Université Cheikh Anta Diop - Senegal
36. Dada Lebchir ([email protected]) - Faculté de Médecine, Université de Nouakchott Al Aasriya - Mauritania
37. Mohamed El Moctar Septy (@msepty)([email protected]) - Faculté de Médecine, Université de Nouakchott Al Aasriya - Mauritania
38. Ahmedou Moulaye Idriss ([email protected]) - Faculté de Médecine, Université de Nouakchott Al Aasriya - Mauritania
39. Yahya Ould Tfeil ([email protected]) - Faculté de Médecine, Université de Nouakchott Al Aasriya - Mauritania
40. Artemisa Mendes Moreno ([email protected]) - Universidade de Cabo Verde - Cabo Verde
41. Samantha Horvath ([email protected]) - Kitware Inc. - USA
42. Kyle Sunderland ([email protected]) - Queen’s University - Canada
43. Emel Alkim ([email protected]) - Stanford University Department of Biomedical Data Science - Stanford University - USA
44. Siham Alaoui ([email protected]) - University Abdelmalek Essaâdi - Morocco
45. Mouhcine Madani ([email protected]) - University Abdelmalek Essaâdi - Morocco
46. Otman Aghzout ([email protected]) - University Abdelmalek Essaâdi - Morocco
47. Badiaa Ait Ahmed ([email protected]) - University Abdelmalek Essaâdi - Morocco
48. Attila Nagy (@acetylsalicyl)([email protected]) - Faculty of Medicine, University of Szeged - Hungary
49. Juan Andrés Ramírez González ([email protected]) - University of Las Palmas de Gran Canaria - Spain
50. Katie Mastrogiacomo ([email protected]) - Surgical Planning Laboratory - USA
51. Carl-Fredrik Westin ([email protected]) - Brigham and Women's Hospital and Harvard Medical School - USA
52. Adam Rankin (@adamrankin)([email protected]) - Robarts Research Institute - Canada
53. Joël Spaltenstein ([email protected]) - OsiriX Foundation - Switzerland
54. Nicolas van Dooren ([email protected]) - OsiriX Foundation - Switzerland
55. Erik Ziegler ([email protected]) - Open Health Imaging Foundation- France
56. William Wells ([email protected]) - Harvard Medical School - USA
57. Thomas Noh ([email protected]) - Brigham and Women's Hospital - USA
58. Hans Knutsson ([email protected]) - Linköpingd University, Dept of Biomedical Engineering - Sweden
59. Nikolaos Makris ([email protected]) - Brigham and Women’s Hospital and Harvard Medical School - USA
60. María Dolores Afonso Suárez ([email protected]) - University of Las Palmas de Gran Canaria - Spain
61. José Luis González Mora ([email protected]) - Universidad de la Laguna - Spain
62. Francisco José Marcano Serrano ([email protected]) - Universidad de la Laguna - Spain
63. David Díaz Martín ([email protected]) - Universidad de la Laguna - Spain
64. Larisa Akrofie (@LarisaAkrofie)([email protected]) - Levers in Heels - Ghana
65. Md Nurul Karim ([email protected]) - University of Bremen - Germany
66. Anuradha Dayal ([email protected]) - Children's National Hospital - USA

Statistics

1. 7 Topics
2. 41 projects
3. 66 registrants
4. 31 institutions
5. 15 countries
6. 3 continents