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MVP2 Qualified: What gene's activity or abundance is decreased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? #247

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sstemann opened this issue Jan 9, 2023 · 4 comments
Open

MVP2 Qualified: What gene's activity or abundance is decreased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? #247

sstemann opened this issue Jan 9, 2023 · 4 comments
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@webyrd @brettasmi
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(im)Prove Agent MVP2 standup Unsecret Agent

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@sstemann
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sstemann commented Jan 9, 2023 •
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Query: mvp2cMetformin.json
PK: 6efd34ba-5908-49ae-87d4-99b72d6cd30f

This was run on ARS-Dev looking for KPs and ARAs that have updated their dev environments to support qualifiers in particular for the MVP2 template query and list of sample inputs from UI team

Also, this is not a creative mode/inferred query

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@sstemann sstemann changed the title MVP2 Qualified: "What gene's activity or abundance is increased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? MVP2 Qualified: What gene's activity or abundance is increased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? Jan 9, 2023
@khanspers
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Looks like the query is using "qualifier_value": "decreased" instead of increased?

@colleenXu
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colleenXu commented Jan 9, 2023 •
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Noting that BTE may have more edges/results, but we haven't added "qualifier value hierarchy expansion" to our tool yet.

(oh, and Kristina has a good point above...)

@cbizon
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cbizon commented Jan 10, 2023

For aragorn the problem is a smartapi registration issue. Hitting aragorn directly produces results. We're working on the registration issue.

@sstemann sstemann changed the title MVP2 Qualified: What gene's activity or abundance is increased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? MVP2 Qualified: What gene's activity or abundance is decreased by a particular chemical (Metformin, PUBCHEM.COMPOUND:4091)? Jan 10, 2023
@sstemann sstemann added the MVP2 label Jan 30, 2023
@sstemann
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standard mode 0s for Improve and Unsecret
creative mode 300 for Improve and 58 for Unsecret

Is that intentional?

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@webyrd @khanspers @brettasmi @cbizon @sstemann @colleenXu @pg427