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Current released version failing R check #1122

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schuemie opened this issue Jun 14, 2024 · 2 comments
Open

Current released version failing R check #1122

schuemie opened this issue Jun 14, 2024 · 2 comments

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@schuemie
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I see

── Error ('test-2-againstCdm.R:82:3'): Cohort diagnostics in incremental mode ──
Error in `formatChunk(pkValuesInDb = env$primaryKeyValuesInDb, chunk = chunk)`: concept_set_id is of type numeric which cannot be converted between data frames pkValuesInDb and chunk
Backtrace:
     ▆
  1. ├─CohortDiagnostics::createMergedResultsFile(...) at test-2-againstCdm.R:82:3
  2. │ └─CohortDiagnostics::uploadResults(...)
  3. │   └─ResultModelManager::uploadResults(...)
  4. │     └─ResultModelManager:::uploadTable(...)
  5. │       └─readr::read_csv_chunked(...)
  6. │         └─readr:::read_delimited_chunked(...)
  7. │           └─readr:::read_***s_chunked(...)
  8. │             └─readr:::read_***s_chunked_(...)
  9. └─readr (local) `<fn>`(`<spc_tbl_[,5]>`, 1L)
 10.   └─private$callback(data, index)
 11.     └─ResultModelManager:::uploadChunk(...)
 12.       └─ResultModelManager:::formatChunk(...)
@ablack3
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ablack3 commented Aug 29, 2024

I'm getting this error when using the current version of CohortDiagnostics

@schuemie
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schuemie commented Sep 12, 2024

The current released version is still failing R check. Please create a release somewhere in the next two weeks that fixes this so CohortDiagnostics can be included in the 2024Q3 HADES-wide release

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