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MC on the reference allele #9

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hdashnow opened this issue Jun 21, 2023 · 0 comments
Open

MC on the reference allele #9

hdashnow opened this issue Jun 21, 2023 · 0 comments

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@hdashnow
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It would be extremely useful to report the MC on the reference allele. This could go in the INFO. This would enable us to detect repeat differences from the reference other than simply looking at allele length and the entire sequence. If it adds much to run-time, this could be pre-calculated for a defined regions.
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@hdashnow