{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":92293400,"defaultBranch":"master","name":"galaxytools","ownerLogin":"bernt-matthias","currentUserCanPush":false,"isFork":true,"isEmpty":false,"createdAt":"2017-05-24T13:08:39.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25689525?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1722456624.0","currentOid":""},"activityList":{"items":[{"before":"be43724eeb53240b990a8efc8489c09fa6c9c947","after":"49735028a7184146f1d5f88ef4214573a98276c5","ref":"refs/heads/topic/fix-cut","pushedAt":"2024-08-16T09:09:15.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bgruening","name":"Björn Grüning","path":"/bgruening","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/469983?s=80&v=4"},"commit":{"message":"Update tools/text_processing/text_processing/macros.xml","shortMessageHtmlLink":"Update tools/text_processing/text_processing/macros.xml"}},{"before":"e29b4844cb83c3fb32db5c317d161b2f6fc61a3f","after":"be43724eeb53240b990a8efc8489c09fa6c9c947","ref":"refs/heads/topic/fix-cut","pushedAt":"2024-08-16T09:09:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bgruening","name":"Björn Grüning","path":"/bgruening","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/469983?s=80&v=4"},"commit":{"message":"Update cut.xml","shortMessageHtmlLink":"Update cut.xml"}},{"before":"740ff7f2db4ecd0ef197831a8870194a6b11cf0e","after":"87a76f109a15c4366ea0c4627278dd65f59072c1","ref":"refs/heads/topic/uniprot-batch","pushedAt":"2024-08-06T11:31:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix python linting","shortMessageHtmlLink":"fix python linting"}},{"before":"16b826862e7249aac5f8acb8a528d972c8fc969b","after":"740ff7f2db4ecd0ef197831a8870194a6b11cf0e","ref":"refs/heads/topic/uniprot-batch","pushedAt":"2024-08-06T10:20:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix tests","shortMessageHtmlLink":"fix tests"}},{"before":"a47916a34fb20eef767be3ce3db65e8b86ff3e45","after":"16b826862e7249aac5f8acb8a528d972c8fc969b","ref":"refs/heads/topic/uniprot-batch","pushedAt":"2024-07-31T20:11:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"bump","shortMessageHtmlLink":"bump"}},{"before":null,"after":"a47916a34fb20eef767be3ce3db65e8b86ff3e45","ref":"refs/heads/topic/uniprot-batch","pushedAt":"2024-07-31T20:10:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"allow batched access to id mapping\n\nuniprot has a limit of 100k IDs","shortMessageHtmlLink":"allow batched access to id mapping"}},{"before":"21543447d51b7c1840d3a4a58ac7a145a5fb7fa4","after":"cf8111792d498599a6d41b5910d66695e26d8b9f","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-24T11:35:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"Fix suffix","shortMessageHtmlLink":"Fix suffix"}},{"before":"e95514bc47452db71bd273debff55452e5f15452","after":"21543447d51b7c1840d3a4a58ac7a145a5fb7fa4","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T13:31:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"use TOOL_VERSION and VERSION_SUFFIX","shortMessageHtmlLink":"use TOOL_VERSION and VERSION_SUFFIX"}},{"before":"cef2bb41e33f03a42432ce8a7bfb6cb059abe173","after":"e95514bc47452db71bd273debff55452e5f15452","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T11:48:04.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"add profile and do not redirect stderr","shortMessageHtmlLink":"add profile and do not redirect stderr"}},{"before":"d755d7a8cf8b44d773bda2ba624e46bf310dff66","after":"cef2bb41e33f03a42432ce8a7bfb6cb059abe173","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T11:33:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"add profile and do not redirect stderr","shortMessageHtmlLink":"add profile and do not redirect stderr"}},{"before":"658d9c1ddee99bc33cfd0fda9c7ba9daf3195bae","after":"d755d7a8cf8b44d773bda2ba624e46bf310dff66","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T09:28:11.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix linter errors","shortMessageHtmlLink":"fix linter errors"}},{"before":"b55ea011444902f929dd9a0ad4d71ec0c68cdbc0","after":"658d9c1ddee99bc33cfd0fda9c7ba9daf3195bae","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T09:22:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix linter errors","shortMessageHtmlLink":"fix linter errors"}},{"before":"a2d0e956125e1fb924cf8e139560de122b0cf006","after":"b55ea011444902f929dd9a0ad4d71ec0c68cdbc0","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T09:17:03.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"Merge branch 'master' into topic/imagej-fix-relative-path","shortMessageHtmlLink":"Merge branch 'master' into topic/imagej-fix-relative-path"}},{"before":null,"after":"a2d0e956125e1fb924cf8e139560de122b0cf006","ref":"refs/heads/topic/imagej-fix-relative-path","pushedAt":"2024-07-23T09:16:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix for imagej relative path handling\n\nfixes https://github.com/bgruening/galaxytools/issues/1452","shortMessageHtmlLink":"fix for imagej relative path handling"}},{"before":"1e3abba7395f92c95e50f6a72935118d1c482d59","after":"b7f4b9b05946009ced0c4faeadc7acca98a90131","ref":"refs/heads/master","pushedAt":"2024-07-11T11:49:17.000Z","pushType":"push","commitsCount":324,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"Update .shed.yml (#1449)","shortMessageHtmlLink":"Update .shed.yml (bgruening#1449)"}},{"before":"8b66b5e45789db7bcd961dc204fa2e64796f45f3","after":"e29b4844cb83c3fb32db5c317d161b2f6fc61a3f","ref":"refs/heads/topic/fix-cut","pushedAt":"2024-07-09T07:22:30.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"bump","shortMessageHtmlLink":"bump"}},{"before":null,"after":"8b66b5e45789db7bcd961dc204fa2e64796f45f3","ref":"refs/heads/topic/fix-cut","pushedAt":"2024-07-08T15:26:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"fix cut tool\n\nthe list of columns must be after `-f` (or `-c` i.e. `cut_element`).","shortMessageHtmlLink":"fix cut tool"}},{"before":"02676b2d46ce2c7f0c3b2705bc0f76075e5deca6","after":null,"ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T21:12:07.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"}},{"before":"cb39f6a93a68ab89c62c76316bd5987ef4147dd7","after":"02676b2d46ce2c7f0c3b2705bc0f76075e5deca6","ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T18:21:38.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"linter fixes","shortMessageHtmlLink":"linter fixes"}},{"before":"2655948baa94b1f0af1b93e3e12b1ba1d10cb767","after":"cb39f6a93a68ab89c62c76316bd5987ef4147dd7","ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T18:17:39.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"linter fixes","shortMessageHtmlLink":"linter fixes"}},{"before":"5b6c6858ab75e8ceabbb5388bb98e59b2a7ae54c","after":"2655948baa94b1f0af1b93e3e12b1ba1d10cb767","ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T13:17:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"linter fixes","shortMessageHtmlLink":"linter fixes"}},{"before":"6c39789728598e10bda74b6fcf7d8de61fbd11c7","after":"5b6c6858ab75e8ceabbb5388bb98e59b2a7ae54c","ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T13:05:40.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"adapt uniprot id mapping tool to new API\n\n- building on the python script given at https://www.uniprot.org/help/id_mapping#example_uniparc\n- currently without limits (i.e. submitting to many IDs will lead to an\n error)\n- added code to statically define from and to selects using the API.\n from and to have been simplified a bit.","shortMessageHtmlLink":"adapt uniprot id mapping tool to new API"}},{"before":null,"after":"6c39789728598e10bda74b6fcf7d8de61fbd11c7","ref":"refs/heads/uniprot-restore","pushedAt":"2024-05-22T13:04:37.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"adapt uniprot id mapping tool to new API\n\n- building on the python script given at https://www.uniprot.org/help/id_mapping#example_uniparc\n- currently without limits (i.e. submitting to many IDs will lead to an\n error)\n- added code to statically define from and to selects using the API.\n from and to have been simplified a bit.","shortMessageHtmlLink":"adapt uniprot id mapping tool to new API"}},{"before":"288f8bef36ccf645454d44bb45a677d46d424c13","after":"b985ba7bea101c1bf59b2639aba4fcc44eff6772","ref":"refs/heads/fix/grep","pushedAt":"2024-03-27T22:25:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"indentation","shortMessageHtmlLink":"indentation"}},{"before":"583fb1dc237d80ebbc5418e1b7a8d3ecdd00603a","after":"288f8bef36ccf645454d44bb45a677d46d424c13","ref":"refs/heads/fix/grep","pushedAt":"2024-03-27T22:24:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"bump","shortMessageHtmlLink":"bump"}},{"before":null,"after":"583fb1dc237d80ebbc5418e1b7a8d3ecdd00603a","ref":"refs/heads/fix/grep","pushedAt":"2024-03-27T16:52:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"add text for not matching pattern","shortMessageHtmlLink":"add text for not matching pattern"}},{"before":null,"after":"889379e12332c83229c16c06673c8965e4fae400","ref":"refs/heads/topic/nl","pushedAt":"2024-01-20T10:09:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"add nl","shortMessageHtmlLink":"add nl"}},{"before":"4c306ed5b0a3c92e5bcbfb39d635f987dd2319f4","after":null,"ref":"refs/heads/update_sortmerna2","pushedAt":"2023-10-20T13:30:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"}},{"before":"053240aef223141159d1a20b70f29dc23bc49bff","after":"4c306ed5b0a3c92e5bcbfb39d635f987dd2319f4","ref":"refs/heads/update_sortmerna2","pushedAt":"2023-10-20T12:22:12.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"eliminate cached_to_index option","shortMessageHtmlLink":"eliminate cached_to_index option"}},{"before":"862987cf4eefbf22e679193bb213070389da070f","after":"053240aef223141159d1a20b70f29dc23bc49bff","ref":"refs/heads/update_sortmerna2","pushedAt":"2023-10-20T11:46:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"bernt-matthias","name":"M Bernt","path":"/bernt-matthias","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25689525?s=80&v=4"},"commit":{"message":"eliminate cached_to_index option","shortMessageHtmlLink":"eliminate cached_to_index option"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0xNlQwOTowOToxNS4wMDAwMDBazwAAAASb9174","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOC0xNlQwOTowOToxNS4wMDAwMDBazwAAAASb9174","endCursor":"Y3Vyc29yOnYyOpK7MjAyMy0xMC0yMFQxMTo0NjowMC4wMDAwMDBazwAAAAOb1uyW"}},"title":"Activity · bernt-matthias/galaxytools"}