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Dockerfile
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FROM ubuntu:20.04 as builder
USER root
# ALL tool versions used by opt-build.sh
# need to keep in sync with setup.sh
ARG VER_HTSLIB="1.20"
ARG VER_LIBBW="0.4.6"
ARG VER_LIBDEFLATE="v1.6"
ENV OPT /opt/wtsi-cgp
ENV PATH $OPT/bin:$PATH
ENV LD_LIBRARY_PATH $OPT/lib
ENV LC_ALL C
RUN apt-get -yq update
RUN apt-get install -yq --no-install-recommends build-essential
RUN apt-get install -yq --no-install-recommends apt-transport-https
RUN apt-get install -yq --no-install-recommends curl
RUN apt-get install -yq --no-install-recommends ca-certificates
RUN apt-get install -yq --no-install-recommends make
RUN apt-get install -yq --no-install-recommends bzip2
RUN apt-get install -yq --no-install-recommends gcc
RUN apt-get install -yq --no-install-recommends libtasn1-dev
RUN apt-get install -yq --no-install-recommends nettle-dev
RUN apt-get install -yq --no-install-recommends libgmp-dev
RUN apt-get install -yq --no-install-recommends libp11-kit-dev
RUN apt-get install -yq --no-install-recommends zlib1g-dev
RUN apt-get install -yq --no-install-recommends libbz2-dev
RUN apt-get install -yq --no-install-recommends liblzma-dev
RUN apt-get install -yq --no-install-recommends libcurl4-gnutls-dev
RUN apt-get install -yq --no-install-recommends libncurses5-dev
RUN apt-get install -yq --no-install-recommends libgnutls28-dev
RUN mkdir -p $OPT/bin
WORKDIR /install_tmp
ADD build/opt-build.sh build/
RUN bash build/opt-build.sh $OPT
COPY . .
RUN bash build/opt-build-local.sh $OPT
FROM ubuntu:20.04
LABEL maintainer="[email protected]"\
uk.ac.sanger.cgp="Cancer, Ageing and Somatic Mutation, Wellcome Sanger Institute" \
description="cgpBigWig"
ENV OPT /opt/wtsi-cgp
ENV PATH $OPT/bin:$PATH
ENV LD_LIBRARY_PATH $OPT/lib
ENV LC_ALL C
RUN apt-get -yq update
RUN apt-get install -yq --no-install-recommends \
apt-transport-https \
curl \
ca-certificates \
bzip2 \
zlib1g \
liblzma5 \
libncurses5 \
libcurl3-gnutls \
unattended-upgrades && \
unattended-upgrade -d -v && \
apt-get remove -yq unattended-upgrades && \
apt-get autoremove -yq
RUN mkdir -p $OPT
COPY --from=builder $OPT $OPT
## USER CONFIGURATION
RUN adduser --disabled-password --gecos '' ubuntu && chsh -s /bin/bash && mkdir -p /home/ubuntu
USER ubuntu
WORKDIR /home/ubuntu
CMD ["/bin/bash"]