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How GBIF deals with uncertain identification notes (nr. prox. probably others). #88

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jhnwllr opened this issue Jun 13, 2022 · 0 comments

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jhnwllr commented Jun 13, 2022

gbif/portal-feedback#4124

Within entomology, species proxima (Latin: 'the nearest species', abbreviated prox. or sp. prox.) and species near (abbreviated nr. or sp. nr.) indicate a specimen is similar to, but distinct from, a described species.[4]

The GBIF name matcher does not take into account "uncertainty" qualifiers in embedded the name (for example: nr. prox.).

For example,
Camponotus vicinus nr. Mayr, 1870 has a qualifier of "nr." for "near". Meaning the publisher was not sure about it.

All occurrences with this name get a taxon match higherrank flag.
https://www.gbif.org/occurrence/search?advanced=1&verbatim_scientific_name=Camponotus%20vicinus%20nr.%20Mayr,%201870

Because the name parser recognizes it as a subspecies ("rankMarker": "infrasp.")
https://api.gbif.org/v1/parser/name?name=Camponotus%20vicinus%20nr.%20Mayr,%201870

Searches for Camponotus vicinus Mayr, 1870 without "nr." return "nr." occurrences as well.
https://www.gbif.org/occurrence/search?issue=TAXON_MATCH_HIGHERRANK&taxon_key=5034187&advanced=1

Here is a table of other nr. examples. All suffer from the same issue of false positive higher rank flagging and no account for the nr. qualifier.

v_scientificname name_match_link name_parser_link
Camponotus vicinus nr. Mayr, 1870 link link
Hydraena puncticollis nr. Sharp 1882 link link
Catocala amica nr. (H³bner, 1818) link link
Nectopsyche n. sp. 26 (nr. punctata) link link
Pilosella dichotoma microsp. 'Hieracium bigeminum' L÷nnr. link link
Formica wheeleri nr. Creighton, 1935 link link
Chimarra n. sp. 4 BR (nr. teresae/camposae) link link
Myrmica detritinodis nr. Emery, 1921 link link
Detritivora argyrea nr. (H. Bates, 1868) link link
Coelichneumon microstict. concolor Heinr. link link
Formica podzolica nr. Francoeur, 1973 link link
Trouessartia funiculata nr. link link
Platynus robustus group nr. platysmoides link link
Formica obscuripes nr. Forel, 1886 link link
Solenopsis molesta nr. (Say) link link
Dyspyralis nigellus nr. (Strecker, 1900) link link
Euglossa (Euglossa) deceptrix nr. link link
Polyommatus dorylas nr. ([Dennis & Schifferm³ller], 1775) link link
Phytocoris ceanothicus, sp. nr. link link
Macapta albivitta nr. Hampson, 1910 link link
Piona floridana nr. link link
Temnothorax andrei nr. (Emery, 1895) link link
Hermeuptychia hermes nr. (Fabricius, 1775) link link
Anthene larydas nr. link link
Ashmeadiella (Ashmeadiella) meliloti nr. link link
Dracaena goldieana spec.nr. Damen link link
Agrotis aulacias (n.sp. nr. ) link link
Leucanopsis sp.10 (nr. falacra) link link
Webera ludwigii (Spreng. ex Schwõgr.) F³rnr. var. major Schimp. ex Husn. link link
Temnothorax manni nr. (Wheeler, W.M., 1914) link link
Helicella tuberculosa Conr. link link
Smicridea n. sp. 1 Chile (nr. annulicornis) link link
Marilia n. sp. 2 EC (nr. microps) link link
Aulocera padma nr. (Kollar, [1844]) link link
Aturus droueti nr. link link
Hydraena newtoni nr. Perkins 1980 link link
Slaterocoris stygicus nr. (Say, 1832) link link
Bitoma parallela [sp.nr.] link link
Polyommatus amor nr. (Lang, 1884) link link
Andrena (Callandrena) agilis nr. link link
Anthidiellum (Anthidiellum) apicale nr. link link
Chrysoritis azurius nr. (Swanepoel, 1975) link link
nr. Orbiculoidea sampsoni link link
Lethe kabrua nr. (Tytler, 1914) link link
Formica argentea nr. Wheeler, W.M., 1912 link link
Thestor camdeboo nr. Dickson & Wykeham, 1994 link link
Cardiochiles apicalis nr. link link
Chloreuptychia arnaca nr. (Fabricius, 1776) link link
camponotus nr.fastigatus link link
Trigonisca (Trigonisca) buyssoni nr. link link
Dianthidium (Dianthidium) subparvum nr. link link
Atoposmia (Eremosmia) daleae nr. link link
Gymnochthebius compactus nr. Perkins 1980 link link
Speyeria zerene nr. (Boisduval, 1852) link link
Sicoderus globulicollis nr. link link
Lasioglossum (Lasioglossum) heterorhinum nr. link link
Odyneropsis (Odyneropsis) gertschi, sp. nr. link link
Cardiochiles nigroclypeus nr. link link
Paralasa hades nr. (Lang, 1884) link link
Citrus nobilis Lonr. link link
Sebasthetops omaliniformis nr. Jach link link
pheidole nr.subarmata link link
Axiocerses harpax nr. (Fabricius, 1775) link link
camponotus nr.coloratus link link
pheidole nr.sagax link link
Hyponephele amardaea nr. (Lederer, [1869]) link link
Pedaliodes exanima nr. (Erschoff, 1875) link link
Strephonota strephon nr. (Fabricius, 1775) link link
Calycopis isobeon nr. (Butler & Druce, 1872) link link
Gymnochthebius nitidus nr. (LeConte 1850) link link
Chazara heydenreichi nr. (Lederer, 1853) link link
pheidole nr.cramptoni link link
Metapenaeopsis kishinouyei nr. link link
Melipona (Michmelia) rufiventris nr. link link
Xylocopa (Schonnherria) muscaria nr. link link
Cardiochiles orizabae nr. link link
Harpypalpus longipes nr. link link
Oxyspirura mansoni nr. (Cobbold, 1879) link link
neivamyrmex nr.diana link link
Parischnogaster jacobsoni nr. (du Buysson, R.) link link
Colletes arizonensis nr. link link
Melissodes (Eumelissodes) confusa nr. link link
Leptogenys quiriguana nr. Wheeler, W.M., 1923 link link
Favonius taxila nr. (Bremer, 1861) link link
Electrostrymon endymion nr. (Fabricius, 1775) link link
Hylaeus illinoisensis nr. (Robertson, 1896) link link
Taygetis kerea nr. Butler, 1869 link link
Argiope keyserlingi nr. Karsch, 1878 link link
hylomyrma nr.longiscapa link link
Cissia myncea nr. (Cramer, 1780) link link
Hyponephele capella nr. (Christoph, 1877) link link
Ministrymon phrutus nr. (Geyer, 1832) link link
Anthophorula (Anthophorisca) pygmaea nr. link link
Metapenaeopsis beebei/mineri nr. link link
Sarota acantus nr. (Stoll, 1781) link link
Dianthidium (Dianthidium) desertorum nr. link link
pheidole nr.tristis link link
Pheidole eparmata nr. Wilson, 2003 link link
pheidole nr.radoszkowskii link link
Alpaida truncata nr. (Keyserling) link link
Steroma superba nr. Butler, 1868 link link
Arcas tuneta nr. link link
Austrarchaea milledgei nr. link link
Formica obscuriventris nr. Mayr, 1870 link link
Strumigenys nevermanni nr. Brown, 1959 link link
Polyrhachis derecyna nr. link link
Bebearia sophus nr. (Fabricius, 1793) link link
Argas robertsi nr. link link
Camponotus albistramineus nr. Wheeler, W.M., 1936 link link
Dicya carnica nr. (Hewitson, 1873) link link
Pedaliodes phrasicla nr. (Hewitson, 1874) link link
Agrotis arenivolans (n.sp. nr. ) link link
Tuxentius melaena nr. (Trimen, 1887) link link
Protopolybia sedula nr. link link
Cyrestis nais nr. Wallace, 1869 link link
Andrena (Callandrena) manifesta n. sp. nr. link link
mycetomoellerius nr.farinosus link link
Coelogyne sect. Speciosaenr. speciosa (bl.) lindl. link link
Rhytidoponera peninsularis nr. Brown, 1958 link link
pheidole nr.araneoides link link
Lasioglossum sagax nr. link link
nr. Crisia elongata link link
Ashmeadiella (Arogochila) erema nr. link link
Pedaliodes thiemei nr. Staudinger, 1897 link link
nr. Palaeosyops fontinalis link link
Euthalia patala nr. Kollar, [1844] link link
Tetraponera liengmei nr. (Forel, 1894) link link
Coelosia truncata (nr. gracilis) link link
Racomitrium canescens (Hedw.inr.Braun) Brid. link link
Androctonus crassicauda nr. (Olivier 1807) link link
Magneuptychia ocnus nr. (Butler, 1867) link link
pachycondyla nr.lenkoi link link
Lasioglossum ephialtum nr. Gibbs link link
Agapostemon (Agapostemon) melliventris nr. link link
Lethe titania nr. Leech, 1891 link link
Nymphidium caricae nr. (Linnaeus, 1758) link link
Strephonota syedra nr. (Hewitson, 1867) link link
Delias hyperapproximata nr. link link
Anthene leptines nr. link link
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