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However, gene_name is "only" the common gene name, and in all the cases I found, a Ensembl gene_id was always present, even if no gene_name was there. Thus, as long as we ensure that gene_id is set, making gene_name optional should be no problem.
The text was updated successfully, but these errors were encountered:
Currently, we have to work around this by excluding any GTF entry that does not have the
gene_name
set:https://github.com/snakemake-workflows/dna-seq-neoantigen-prediction/pull/23/files#diff-bdbc470ee4d301e2056eeaa242d0abb73fd5995234758137dd4b6b2e31a602dcR47-R56
However,
gene_name
is "only" the common gene name, and in all the cases I found, a Ensemblgene_id
was always present, even if nogene_name
was there. Thus, as long as we ensure thatgene_id
is set, makinggene_name
optional should be no problem.The text was updated successfully, but these errors were encountered: