baselineNet_Nopad_Reg_150Epoch.py

import pandas as pd
import numpy as np

import matplotlib.pyplot as plt
from PIL import Image
import os
import cv2
import keras
from keras.models import Sequential
from keras.layers import Conv2D,MaxPooling2D,Dense,Flatten,Activation,Dropout


data=[]
labels=[]
Pneumonia=os.listdir("../content/drive/My Drive/Colab Notebooks/Colab Dataset/chest_xray/train/PNEUMONIA/")
for a in Pneumonia:
    try:
        image=cv2.imread("../content/drive/My Drive/Colab Notebooks/Colab Dataset/chest_xray/train/PNEUMONIA/"+a)
        image_from_array = Image.fromarray(image, 'RGB')
        size_image = image_from_array.resize((64, 64))
        data.append(np.array(size_image))
        labels.append(0)
    except AttributeError:
        print("")

Normal=os.listdir("../content/drive/My Drive/Colab Notebooks/Colab Dataset/chest_xray/train/NORMAL/")
for b in Normal:
    try:
        image=cv2.imread("../content/drive/My Drive/Colab Notebooks/Colab Dataset/chest_xray/train/NORMAL/"+b)
        image_from_array = Image.fromarray(image, 'RGB')
        size_image = image_from_array.resize((64, 64))
        data.append(np.array(size_image))
        labels.append(1)
    except AttributeError:
        print("")
        
        
Cells=np.array(data)
labels=np.array(labels)


np.save("Cells_64x64x3",Cells)
np.save("labels_64x64x3",labels)


Cells=np.load("/content/drive/My Drive/Colab Notebooks/Colab Dataset/Cells_64x64x3.npy")
labels=np.load("/content/drive/My Drive/Colab Notebooks/Colab Dataset/labels_64x64x3.npy")


s=np.arange(Cells.shape[0])
np.random.shuffle(s)
Cells=Cells[s]
labels=labels[s]


num_classes=len(np.unique(labels))
len_data=len(Cells)


(x_train,x_test)=Cells[(int)(0.1*len_data):],Cells[:(int)(0.1*len_data)]
x_train = x_train.astype('float32')/255
x_test = x_test.astype('float32')/255
train_len=len(x_train)
test_len=len(x_test)


(y_train,y_test)=labels[(int)(0.1*len_data):],labels[:(int)(0.1*len_data)]


y_train=keras.utils.to_categorical(y_train,num_classes)
y_test=keras.utils.to_categorical(y_test,num_classes)


from keras.preprocessing.image import ImageDataGenerator

datagen = ImageDataGenerator(
        featurewise_center=False,  # set input mean to 0 over the dataset
        samplewise_center=False,  # set each sample mean to 0
        featurewise_std_normalization=False,  # divide inputs by std of the dataset
        samplewise_std_normalization=False,  # divide each input by its std
        zca_whitening=False,  # apply ZCA whitening
        rotation_range=10,  # randomly rotate images in the range (degrees, 0 to 180)
        zoom_range = 0.1, # Randomly zoom image 
        width_shift_range=0.1,  # randomly shift images horizontally (fraction of total width)
        height_shift_range=0.1,  # randomly shift images vertically (fraction of total height)
        horizontal_flip=False,  # randomly flip images
        vertical_flip=False)  # randomly flip images

datagen.fit(x_train)


model=Sequential()
model.add(Conv2D(filters=32,kernel_size=3,input_shape=(64,64,3),activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Conv2D(filters=64,kernel_size=3,activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Conv2D(filters=128,kernel_size=3,activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Conv2D(filters=256,kernel_size=3,activation="relu"))
model.add(MaxPooling2D(pool_size=2))
model.add(Flatten())
model.add(Dense(500,activation="relu"))
model.add(Dropout(0.2))
model.add(Dense(500,activation="relu"))
model.add(Dropout(0.2))
model.add(Dense(500,activation="relu"))
model.add(Dropout(0.2))
model.add(Dense(2,activation="softmax"))
model.summary()


model.compile(loss='categorical_crossentropy', optimizer='adam', metrics=['accuracy'])


history = model.fit_generator(datagen.flow(x_train,y_train),
                              epochs = 150, validation_data = (x_test,y_test))
                    
                    
model.save("/content/drive/My Drive/baselinenet_nopad_reg_150epoch_model.h5")


from sklearn.metrics import confusion_matrix
pred = model.predict(x_test)
pred = np.argmax(pred,axis = 1) 
y_true = np.argmax(y_test,axis = 1)


CM = confusion_matrix(y_true, pred)
from mlxtend.plotting import plot_confusion_matrix
fig, ax = plot_confusion_matrix(conf_mat=CM ,  figsize=(5, 5))
plt.show()