Potential new cell types & mappings for whole human brain scRNAseq dataset #1980
Comments
|
CC @hkir-dev Note - it may be worth contacting Siletti to clear up any ambiguities once a first pass at mapping has been done. |
|
@bvarner-ebi - have made as start at this as want to some example mappings for a demo. This is a uniq'd list of entries in
|
|
This comment is in progress.
|
|
@hkir-dev, can you comment on the mappings above and if you need further input from me? Notes on mappings: My understand is that @dosumis would like to move forward using the confident mappings (those with no "?"). |
ghost
closed this as 
Paper: https://doi.org/10.1101/2022.10.12.511898 Siletti et al., 2022 bioRxiv Transcriptomic diversity of cell types across the adult human brain
supplementary-material
Supplementary material table 2 has two columns that are potentially mappable to cell types:
Supercluster- Shawn worked on mapping and adding terms - see #1743 for details. This work is mostly done but it might be worth following up the unchecked items on Shawn's list - particularly grouping of types derived from upper and lower rhombic lip.Subtype auto-annotation: Review contents of this column - referring back to text of paper to work out if we should add a new cell type to CL or whether we have an existing type that could be mapped to.This is a uniq'd list of entries in
Subtype auto-annotationcolumn + some potential mappings. But note - it can be useful to look at the context of the rest of the row in table 1 to work out what is being referred to.The text was updated successfully, but these errors were encountered: