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Improve species identification reliability on edge cases or poor quality inputs #83

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kbessonov1984 opened this issue Nov 9, 2020 · 0 comments

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@kbessonov1984
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kbessonov1984 commented Nov 9, 2020

  • the RefSeq sketch is stale and needs to be updated more frequently to match with the NCBI RefSeq database sketch.
  • Also in species prediction module implement species prediction threshold via min MASH score check in cases when all top hits are equal to MASH p-value of 1 (no certainty) due to poor WGS data quality input (e.g. truncated library). In this case, return species "-" instead of some erroneous prediction
@kbessonov1984 kbessonov1984 changed the title Improve species identification Improve species identification edge cases on poor inputs Nov 9, 2020
@kbessonov1984 kbessonov1984 changed the title Improve species identification edge cases on poor inputs Improve species identification reliability on edge cases or poor quality inputs Dec 9, 2020
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