You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
As it seems Mash does not easily provide per-read or per-contig classification, it will be difficult to perform contamination filtering using only Mash. In order to perform read-based and/or contig-based contamination filtering, we should implement Kraken into Proksee.
We should still leverage Mash in the early stages for species selection, and for recognizing from a very high-level the possibility of contamination.
The text was updated successfully, but these errors were encountered:
Integration of Kraken into Proksee will require more consideration, as Kraken may have memory requirements that make running Proksee increasingly difficult.
As it seems Mash does not easily provide per-read or per-contig classification, it will be difficult to perform contamination filtering using only Mash. In order to perform read-based and/or contig-based contamination filtering, we should implement Kraken into Proksee.
We should still leverage Mash in the early stages for species selection, and for recognizing from a very high-level the possibility of contamination.
The text was updated successfully, but these errors were encountered: