{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":63755587,"defaultBranch":"master","name":"MMseqs2","ownerLogin":"soedinglab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-07-20T06:17:59.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/7237671?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715406327.0","currentOid":""},"activityList":{"items":[{"before":"88d102d976a1ac06880b4965d84ad7298c62537c","after":"87e7103d289029dc3345f85ea9a4c4c6d6416e46","ref":"refs/heads/master","pushedAt":"2024-09-05T04:07:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Switch to github hosted mac arm runner for testing","shortMessageHtmlLink":"Switch to github hosted mac arm runner for testing"}},{"before":"8ef39f4151eddcdc78f9c2dadf6b4dd6864435c9","after":"88d102d976a1ac06880b4965d84ad7298c62537c","ref":"refs/heads/master","pushedAt":"2024-08-25T14:43:47.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Merge pull request #878 from Woosub-Kim/tmp\n\nfix createclusearchdb ordering issue","shortMessageHtmlLink":"Merge pull request #878 from Woosub-Kim/tmp"}},{"before":"ffb05619cadadd8655b8719818ed566caaa6d0a6","after":"8ef39f4151eddcdc78f9c2dadf6b4dd6864435c9","ref":"refs/heads/master","pushedAt":"2024-08-16T06:21:18.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Merge pull request #872 from leejoey0921/fix/prefilter_segfault\n\nfix: prefilter segfault","shortMessageHtmlLink":"Merge pull request #872 from leejoey0921/fix/prefilter_segfault"}},{"before":"c498f51053e2f550a4ab4bee534b0ef80033a2b3","after":"ffb05619cadadd8655b8719818ed566caaa6d0a6","ref":"refs/heads/master","pushedAt":"2024-08-02T03:52:07.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix mismatched new[],delete","shortMessageHtmlLink":"Fix mismatched new[],delete"}},{"before":"816c5c91da9f0360f2c99d066a77ef033e917e79","after":"c498f51053e2f550a4ab4bee534b0ef80033a2b3","ref":"refs/heads/master","pushedAt":"2024-07-31T04:42:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Disable nedmalloc due to openmp crash in cygwin","shortMessageHtmlLink":"Disable nedmalloc due to openmp crash in cygwin"}},{"before":"fb38b7d4926a102997744f0cb5853d0a3c53f5bd","after":"816c5c91da9f0360f2c99d066a77ef033e917e79","ref":"refs/heads/master","pushedAt":"2024-07-26T04:57:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Fix PPOS","shortMessageHtmlLink":"Fix PPOS"}},{"before":"a14688744081c15439fa3092eec9dfd8be40440b","after":"fb38b7d4926a102997744f0cb5853d0a3c53f5bd","ref":"refs/heads/master","pushedAt":"2024-07-26T04:53:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Fix PPOS code in convertalis","shortMessageHtmlLink":"Fix PPOS code in convertalis"}},{"before":"62975ca936b912083c2218e4e30ad962901cbb3b","after":"a14688744081c15439fa3092eec9dfd8be40440b","ref":"refs/heads/master","pushedAt":"2024-07-23T06:31:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Allow tsv2exprofiledb to not compress outputs","shortMessageHtmlLink":"Allow tsv2exprofiledb to not compress outputs"}},{"before":"6267ffba554845c1b284de3f665d2b143fa81a55","after":"62975ca936b912083c2218e4e30ad962901cbb3b","ref":"refs/heads/master","pushedAt":"2024-07-11T11:18:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Move azure to macos-12","shortMessageHtmlLink":"Move azure to macos-12"}},{"before":"9c04ae431d007eebea5a1ddbb2f969139283b0a0","after":"6267ffba554845c1b284de3f665d2b143fa81a55","ref":"refs/heads/master","pushedAt":"2024-07-11T05:57:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix realignment coverage","shortMessageHtmlLink":"Fix realignment coverage"}},{"before":"36ac6b5adbc1a7bc1de7747db412aa08a673fbf6","after":"9c04ae431d007eebea5a1ddbb2f969139283b0a0","ref":"refs/heads/master","pushedAt":"2024-07-09T15:00:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix GCC 14 template warnings","shortMessageHtmlLink":"Fix GCC 14 template warnings"}},{"before":"0b27c9d7d7757f9530f2efab14d246d268849925","after":"36ac6b5adbc1a7bc1de7747db412aa08a673fbf6","ref":"refs/heads/master","pushedAt":"2024-07-08T00:55:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Clean-up dbreader in summarizeresult","shortMessageHtmlLink":"Clean-up dbreader in summarizeresult"}},{"before":"25fc2108e0da107de5da157d68e5e7d8274a69ea","after":"0b27c9d7d7757f9530f2efab14d246d268849925","ref":"refs/heads/master","pushedAt":"2024-06-11T07:38:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Allow resuming of interrupted downloads if databases and createtaxdb","shortMessageHtmlLink":"Allow resuming of interrupted downloads if databases and createtaxdb"}},{"before":"5f23f1fd6d88056879d901f5d027f18d592d785c","after":"25fc2108e0da107de5da157d68e5e7d8274a69ea","ref":"refs/heads/master","pushedAt":"2024-05-23T07:07:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Explicitly set omp include directories","shortMessageHtmlLink":"Explicitly set omp include directories"}},{"before":"417f22f272b5500b9f33c6c04652e6bcf2aac21b","after":"5f23f1fd6d88056879d901f5d027f18d592d785c","ref":"refs/heads/master","pushedAt":"2024-05-21T08:42:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix SAM output's backtrace for nucl-prot backtraces and show rev-comp seq correctly #845","shortMessageHtmlLink":"Fix SAM output's backtrace for nucl-prot backtraces and show rev-comp…"}},{"before":"b6db541afd2be9ce802d9bbbd2018d42dcd13231","after":"417f22f272b5500b9f33c6c04652e6bcf2aac21b","ref":"refs/heads/master","pushedAt":"2024-05-21T07:07:25.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Implement `qframe`, `tframe` in `convertalis` (#615, #803)","shortMessageHtmlLink":"Implement qframe, tframe in convertalis (#615, #803)"}},{"before":"5b4c8163d057b93ba1063e5352b56e23835986bc","after":"b6db541afd2be9ce802d9bbbd2018d42dcd13231","ref":"refs/heads/master","pushedAt":"2024-05-21T07:03:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Update regression for longest fragment recovery","shortMessageHtmlLink":"Update regression for longest fragment recovery"}},{"before":"998c50a01da760713ca2c7580801e94555d23c4d","after":"5b4c8163d057b93ba1063e5352b56e23835986bc","ref":"refs/heads/master","pushedAt":"2024-05-21T07:00:57.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Recover longest orf after fragment elimination (#832)\n\n* recover longest orf after fragment elimination\r\n\r\n* delete unused variable","shortMessageHtmlLink":"Recover longest orf after fragment elimination (#832)"}},{"before":"d77a852b9e938df74b650e5182c1c75acce0a149","after":"132ba703f24a372ef130c77869c1568c35c4a93f","ref":"refs/heads/block-aligner","pushedAt":"2024-05-14T10:23:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Disable realign for iterative nucl search (for now?)","shortMessageHtmlLink":"Disable realign for iterative nucl search (for now?)"}},{"before":"217af4e1bd83198fd0a4b2b1745cb4b2743a7e17","after":"d77a852b9e938df74b650e5182c1c75acce0a149","ref":"refs/heads/block-aligner","pushedAt":"2024-05-14T09:27:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Precompute ALP values for nucl 5/2","shortMessageHtmlLink":"Precompute ALP values for nucl 5/2"}},{"before":"0c55cfdece95f6042dfe7bbf434ef3c285d672b7","after":"217af4e1bd83198fd0a4b2b1745cb4b2743a7e17","ref":"refs/heads/block-aligner","pushedAt":"2024-05-12T15:03:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Add support for DNA MSAs, add blockaligner, fix prefilter index issue","shortMessageHtmlLink":"Add support for DNA MSAs, add blockaligner, fix prefilter index issue"}},{"before":null,"after":"0c55cfdece95f6042dfe7bbf434ef3c285d672b7","ref":"refs/heads/block-aligner","pushedAt":"2024-05-11T05:45:27.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Merge branch 'master' into block-aligner","shortMessageHtmlLink":"Merge branch 'master' into block-aligner"}},{"before":"d4841a8efad066e9758b6626cc64c5ef5ee53055","after":"998c50a01da760713ca2c7580801e94555d23c4d","ref":"refs/heads/master","pushedAt":"2024-05-02T05:29:22.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"fix typos hindering expandable profile db to be merged properly (#840)","shortMessageHtmlLink":"fix typos hindering expandable profile db to be merged properly (#840)"}},{"before":"804bb2af6d1be4086252c46bf15f3c75a5d9e931","after":"d4841a8efad066e9758b6626cc64c5ef5ee53055","ref":"refs/heads/master","pushedAt":"2024-04-03T02:56:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Future-proof ncbi URLs to include the nlm subdomain","shortMessageHtmlLink":"Future-proof ncbi URLs to include the nlm subdomain"}},{"before":"f6c98807d589091c625db68da258d587795acbab","after":"804bb2af6d1be4086252c46bf15f3c75a5d9e931","ref":"refs/heads/master","pushedAt":"2024-04-02T13:26:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix --taxon-list being broken multi-threaded in prefilter and ungappedprefilter","shortMessageHtmlLink":"Fix --taxon-list being broken multi-threaded in prefilter and ungappe…"}},{"before":"abab073141f0bba788aed068b376de99c4c3519a","after":"f6c98807d589091c625db68da258d587795acbab","ref":"refs/heads/master","pushedAt":"2024-03-07T17:44:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Only fetch cSeqId if its needed in expand","shortMessageHtmlLink":"Only fetch cSeqId if its needed in expand"}},{"before":"950342d9c655e2bbb48ef8a4f52eb87c8db5c317","after":"abab073141f0bba788aed068b376de99c4c3519a","ref":"refs/heads/master","pushedAt":"2024-02-16T05:46:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix test","shortMessageHtmlLink":"Fix test"}},{"before":"78ae2c5b8dba889079745e8013deeb30c3ac8a1a","after":"950342d9c655e2bbb48ef8a4f52eb87c8db5c317","ref":"refs/heads/master","pushedAt":"2024-02-14T08:19:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Remove realloc in QueryMatch to safe memory","shortMessageHtmlLink":"Remove realloc in QueryMatch to safe memory"}},{"before":"cfbea63affb7071bb4f3967bc60d15e1191b85da","after":"78ae2c5b8dba889079745e8013deeb30c3ac8a1a","ref":"refs/heads/master","pushedAt":"2024-02-05T07:36:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"martin-steinegger","name":"Martin Steinegger","path":"/martin-steinegger","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1413571?s=80&v=4"},"commit":{"message":"Update result2msa to support clustered dbs","shortMessageHtmlLink":"Update result2msa to support clustered dbs"}},{"before":"2fad714b525f1975b62c2d2b5aff28274ad57466","after":"cfbea63affb7071bb4f3967bc60d15e1191b85da","ref":"refs/heads/master","pushedAt":"2024-02-01T14:07:42.000Z","pushType":"pr_merge","commitsCount":1,"pusher":{"login":"milot-mirdita","name":"Milot Mirdita","path":"/milot-mirdita","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63657?s=80&v=4"},"commit":{"message":"Fix fasta filename in easy-cluster & easy-linclust usage (#812)","shortMessageHtmlLink":"Fix fasta filename in easy-cluster & easy-linclust usage (#812)"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQwNDowNzo0Ny4wMDAwMDBazwAAAAStYtOx","startCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wOS0wNVQwNDowNzo0Ny4wMDAwMDBazwAAAAStYtOx","endCursor":"Y3Vyc29yOnYyOpK7MjAyNC0wMi0wMVQxNDowNzo0Mi4wMDAwMDBazwAAAAPvM2Bz"}},"title":"Activity · soedinglab/MMseqs2"}