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  • Butantan Institute
  • São Paulo, Brazil

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  1. Cleavage-site-specificity-analysis Cleavage-site-specificity-analysis Public

    This is a small code for cleavage site specificity analysis

    R

  2. Sparsity-analysis Sparsity-analysis Public

    Some quick tips for sparsity analysis, including reduction in a matrix of abundance

  3. TMT_QC_quick_check TMT_QC_quick_check Public

    Reporting the relative reporter ion abundances for peptides identified in the PSM table generated by FragPipe

    R 1

  4. Imputation-in-proteomics Imputation-in-proteomics Public

    Steps to impute multiple columns in a data frame using recursive partitioning and regression trees method

  5. Mouse-skin-peptidomic Mouse-skin-peptidomic Public

    Reproducible markdown for data analysis of the paper "Mouse skin peptidomic analysis of the hemorrhage induced by a snake venom metalloprotease" (https://doi.org/10.1007/s00726-023-03299-w)

    HTML

  6. Open-search-for-PTM-discovery-with-FragPipe Open-search-for-PTM-discovery-with-FragPipe Public

    Open search for PTM discovery with FragPipe - quick visualization