Separate github workflows by container #3
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Test record-linkage Container | |
| on: | |
| workflow_call: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: | |
| - "**" | |
| merge_group: | |
| types: | |
| - checks_requested | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - pyproject.toml | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| TEST_RUNNER_PYTHON_VERSION: 3.10.12 | |
| CONTAINER: record-linkage | |
| jobs: | |
| unit-test-python-containers: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest | |
| run: pip install pytest | |
| - name: Install dependencies | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Run unit tests for container | |
| env: | |
| MPI_DBNAME: testdb | |
| MPI_PASSWORD: pw | |
| MPI_DB_TYPE: postgres | |
| MPI_HOST: localhost | |
| MPI_USER: postgres | |
| MPI_PORT: 5432 | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| run: | | |
| python -m pytest -m "not integration" | |
| integration-test-python-containers: | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 30 | |
| steps: | |
| - name: Check if working directory exists | |
| id: check_dir | |
| run: | | |
| if [ -d "./containers/${{env.CONTAINER}}/tests/integration" ]; then | |
| echo "exists=true" >> $GITHUB_ENV | |
| else | |
| echo "exists=false" >> $GITHUB_ENV | |
| fi | |
| - name: Checkout | |
| if: env.exists == 'true' | |
| uses: actions/checkout@v4 | |
| - name: Setup python ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| if: env.exists == 'true' | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{env.TEST_RUNNER_PYTHON_VERSION}} | |
| cache: pip | |
| - name: Install pytest | |
| if: env.exists == 'true' | |
| run: pip install pytest | |
| - name: Install dependencies | |
| if: env.exists == 'true' | |
| working-directory: ./containers/${{env.CONTAINER}} | |
| # When running as a PR check, instead of importing the SDK from @main, | |
| # import it from the current commit. (Need to do this for all containers) | |
| run: | | |
| if [[ $GITHUB_REF != "refs/heads/main" ]]; then | |
| commit_hash=$(git rev-parse HEAD) | |
| find ./ -name requirements.txt -exec sed -i -e "s/phdi@main/phdi@${commit_hash}/g" {} \; | |
| fi | |
| pip install -r requirements.txt | |
| if [ -f dev-requirements.txt ]; then | |
| pip install -r dev-requirements.txt | |
| fi | |
| - name: Run integration tests for containers | |
| if: env.exists == 'true' | |
| env: | |
| MPI_DBNAME: testdb | |
| MPI_PASSWORD: pw | |
| MPI_DB_TYPE: postgres | |
| MPI_HOST: localhost | |
| MPI_USER: postgres | |
| MPI_PORT: 5432 | |
| working-directory: ./containers/${{env.CONTAINER}}/tests/integration | |
| run: | | |
| python -m pytest -m "integration" |