Engagement/jessica/14883 oh pre migration

prime-router/settings/STLTs/OH/oh-doh.yml

@@ -0,0 +1,199 @@
+- name: "oh-doh"
+  description: "Ohio Department of Health"
+  jurisdiction: "STATE"
+  stateCode: "OH"
+  countyName: null
+  filters:
+    - topic: "covid-19"
+      jurisdictionalFilter: []
+      qualityFilter: null
+      routingFilter: []
+      processingModeFilter: null
+      conditionFilter: null
+      mappedConditionFilter: null
+  featureFlags: []
+  keys: []
+  senders: []
+  receivers:
+    - name: "full-elr"
+      organizationName: "oh-doh"
+      topic: "full-elr"
+      customerStatus: "active"
+      translation:
+        schemaName: "azure:/hl7_mapping/receivers/STLTs/OH/OH-receiver-transform.yml"
+        useTestProcessingMode: false
+        useBatchHeaders: true
+        receivingApplicationName: "OHDOH^2.16.840.1.114222.4.1.3674^ISO"
+        receivingApplicationOID: "2.16.840.1.114222.4.1.3674"
+        receivingFacilityName: "OHDOH^2.16.840.1.114222.4.1.3674^ISO"
+        receivingFacilityOID: "2.16.840.1.114222.4.1.3674"
+        messageProfileId: null
+        replaceValue: {}
+        replaceValueAwithB: {}
+        reportingFacilityName: "CDC PRIME"
+        reportingFacilityId: "36DSMP9999"
+        reportingFacilityIdType: null
+        suppressQstForAoe: true
+        suppressHl7Fields: "OBX-23-11, MSH-19-1, MSH-19-2, MSH-19-3"
+        suppressAoe: false
+        defaultAoeToUnknown: false
+        replaceUnicodeWithAscii: false
+        useBlankInsteadOfUnknown: "patient_race"
+        truncateHDNamespaceIds: false
+        truncateHl7Fields: null
+        usePid14ForPatientEmail: false
+        convertTimestampToDateTime: null
+        cliaForOutOfStateTesting: null
+        cliaForSender: {}
+        phoneNumberFormatting: "STANDARD"
+        suppressNonNPI: false
+        processingModeCode: null
+        replaceDiiWithOid: null
+        applyOTCDefault: false
+        useOrderingFacilityName: "STANDARD"
+        valueSetOverrides: {}
+        nameFormat: "OHIO"
+        receivingOrganization: null
+        convertPositiveDateTimeOffsetToNegative: true
+        stripInvalidCharsRegex: null
+        convertDateTimesToReceiverLocalTime: false
+        useHighPrecisionHeaderDateTimeFormat: false
+        type: "HL7"
+        truncationConfig:
+          truncateHDNamespaceIds: false
+          truncateHl7Fields: []
+          customLengthHl7Fields: {}
+      jurisdictionalFilter:
+        - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state = 'OH') or (Bundle.entry.resource.ofType(Patient).address.state = 'OH')"
+      qualityFilter:
+        # Message id is not empty (MSH-10)
+        - "Bundle.identifier.value.exists()"
+        - "Bundle.entry.resource.ofType(Patient).name.family.exists()"
+        - "Bundle.entry.resource.ofType(Patient).name.given.count() > 0"
+        - "Bundle.entry.resource.ofType(Patient).birthDate.exists()"
+        #  Specimen type (SPM-4) is not empty
+        - "Bundle.entry.resource.ofType(Specimen).where(type.empty()).count() = 0"
+        # Patient has at least a street address(PID-11-1), postal code (PID-11-5),phone(PID-13) or email(PID-13-4)
+        - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty() and telecom.where(system = 'phone').value.empty() and telecom.where(system = 'email').value.empty()).count() = 0"
+        - "((Bundle.entry.resource.ofType(Specimen).collection.collectedPeriod.exists() or Bundle.entry.resource.ofType(Specimen).collection.collected.exists())
+                   or (Bundle.entry.resource.ofType(ServiceRequest).occurrence.exists() or Bundle.entry.resource.ofType(Observation).effective.exists()))"
+      routingFilter: []
+      processingModeFilter: []
+      reverseTheQualityFilter: false
+      conditionFilter:
+        # Accept COVID only
+        - "%resource.interpretation.coding.code = 'A' and (%resource.code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code  in ('840539006')).exists())"
+      mappedConditionFilter: []
+      deidentify: false
+      deidentifiedValue: ""
+      timing:
+        operation: "MERGE"
+        numberPerDay: 12
+        initialTime: "01:35"
+        timeZone: "EASTERN"
+        maxReportCount: 100
+        whenEmpty:
+          action: "NONE"
+          onlyOncePerDay: false
+      description: ""
+      transport:
+        type: SFTP
+        host: sftp
+        port: 22
+        filePath: ./upload
+        credentialName: DEFAULT-SFTP
+      externalName: null
+      enrichmentSchemaNames: []
+      timeZone: null
+      dateTimeFormat: "OFFSET"
+    - name: "full-elr-secondary"
+      organizationName: "oh-doh"
+      topic: "full-elr"
+      customerStatus: "active"
+      translation:
+        schemaName: "azure:/hl7_mapping/receivers/STLTs/OH/OH-receiver-transform.yml"
+        useTestProcessingMode: false
+        useBatchHeaders: true
+        receivingApplicationName: "OHDOH^2.16.840.1.114222.4.1.3674^ISO"
+        receivingApplicationOID: "2.16.840.1.114222.4.1.3674"
+        receivingFacilityName: "OHDOH^2.16.840.1.114222.4.1.3674^ISO"
+        receivingFacilityOID: "2.16.840.1.114222.4.1.3674"
+        messageProfileId: null
+        replaceValue: {}
+        replaceValueAwithB: {}
+        reportingFacilityName: "CDC PRIME"
+        reportingFacilityId: "36DSMP9999"
+        reportingFacilityIdType: null
+        suppressQstForAoe: true
+        suppressHl7Fields: "OBX-23-11, MSH-19-1, MSH-19-2, MSH-19-3"
+        suppressAoe: false
+        defaultAoeToUnknown: false
+        replaceUnicodeWithAscii: false
+        useBlankInsteadOfUnknown: "patient_race"
+        truncateHDNamespaceIds: false
+        truncateHl7Fields: null
+        usePid14ForPatientEmail: false
+        convertTimestampToDateTime: null
+        cliaForOutOfStateTesting: null
+        cliaForSender: {}
+        phoneNumberFormatting: "STANDARD"
+        suppressNonNPI: false
+        processingModeCode: null
+        replaceDiiWithOid: null
+        applyOTCDefault: false
+        useOrderingFacilityName: "STANDARD"
+        valueSetOverrides: {}
+        nameFormat: "OHIO"
+        receivingOrganization: null
+        convertPositiveDateTimeOffsetToNegative: true
+        stripInvalidCharsRegex: null
+        convertDateTimesToReceiverLocalTime: false
+        useHighPrecisionHeaderDateTimeFormat: false
+        type: "HL7"
+        truncationConfig:
+          truncateHDNamespaceIds: false
+          truncateHl7Fields: []
+          customLengthHl7Fields: {}
+      jurisdictionalFilter:
+        - "(Bundle.entry.resource.ofType(ServiceRequest)[0].requester.resolve().organization.resolve().address.state = 'OH') or (Bundle.entry.resource.ofType(Patient).address.state = 'OH')"
+      qualityFilter:
+        # Message id is not empty (MSH-10)
+        - "Bundle.identifier.value.exists()"
+        - "Bundle.entry.resource.ofType(Patient).name.family.exists()"
+        - "Bundle.entry.resource.ofType(Patient).name.given.count() > 0"
+        - "Bundle.entry.resource.ofType(Patient).birthDate.exists()"
+        #  Specimen type (SPM-4) is not empty
+        - "Bundle.entry.resource.ofType(Specimen).where(type.empty()).count() = 0"
+        # Patient has at least a street address(PID-11-1), postal code (PID-11-5),phone(PID-13) or email(PID-13-4)
+        - "Bundle.entry.resource.ofType(Patient).where(address.line[0].empty() and address.postalCode.empty() and telecom.where(system = 'phone').value.empty() and telecom.where(system = 'email').value.empty()).count() = 0"
+        - "((Bundle.entry.resource.ofType(Specimen).collection.collectedPeriod.exists() or Bundle.entry.resource.ofType(Specimen).collection.collected.exists())
+           or (Bundle.entry.resource.ofType(ServiceRequest).occurrence.exists() or Bundle.entry.resource.ofType(Observation).effective.exists()))"
+      routingFilter: []
+      processingModeFilter: []
+      reverseTheQualityFilter: true
+      conditionFilter:
+        # Accept COVID only
+        - "Bundle.entry.resource.ofType(Observation).interpretation.coding.code = 'A' and (%resource.code.coding.extension('https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code').value.where(code  in ('840539006')).exists())"
+      mappedConditionFilter: []
+      deidentify: false
+      deidentifiedValue: ""
+      timing:
+        operation: "MERGE"
+        numberPerDay: 12
+        initialTime: "01:35"
+        timeZone: "EASTERN"
+        maxReportCount: 100
+        whenEmpty:
+          action: "NONE"
+          onlyOncePerDay: false
+      description: ""
+      transport:
+        type: SFTP
+        host: sftp
+        port: 22
+        filePath: ./upload
+        credentialName: DEFAULT-SFTP
+      externalName: null
+      enrichmentSchemaNames: []
+      timeZone: null
+      dateTimeFormat: "OFFSET"

prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/OH/OH-observation-fields.yml

@@ -0,0 +1,7 @@
+constants:
+  OBX: '/PATIENT_RESULT/ORDER_OBSERVATION/OBSERVATION(%{resultIndex})/OBX'
+
+elements:
+  - name: oh-suppress-qst-for-aoe
+    value: [ '""' ]
+    hl7Spec: [ '%{OBX}-29' ]

prime-router/src/main/resources/metadata/hl7_mapping/receivers/STLTs/OH/OH-receiver-transform.yml

@@ -0,0 +1,74 @@
+hl7Class: ca.uhn.hl7v2.model.v251.message.ORU_R01
+
+extends: classpath:/metadata/hl7_mapping/ORU_R01/ORU_R01-base.yml
+
+constants:
+  MSH: '/MSH'
+  OBX: '/PATIENT_RESULT/ORDER_OBSERVATION/OBSERVATION/OBX'
+
+elements:
+  - name: oh-patient-race-coding-system
+    resource: 'Bundle.entry.resource.ofType(Patient).extension("http://ibm.com/fhir/cdm/StructureDefinition/local-race-cd").value.coding'
+    condition: '%resource.code.exists()'
+    value: [ '%resource.system.getCodingSystemMapping()' ]
+    hl7Spec: [ '/PATIENT_RESULT/PATIENT/PID-10-3' ]
+
+  - name: oh-sending-application-namespace-id
+    value: [ '"CDC PRIME - Atlanta, Georgia (Dekalb)"' ]
+    hl7Spec: [ '%{MSH}-3-1' ]
+
+  - name: oh-sending-application-universal-id
+    value: [ '"2.16.840.1.114222.4.1.237821"' ]
+    hl7Spec: [ '%{MSH}-3-2' ]
+
+  - name: oh-sending-application-universal-id-type
+    value: [ '"ISO"' ]
+    hl7Spec: [ '%{MSH}-3-3' ]
+
+  - name: oh-sending-facility-namespace-id
+    value: [ '"CDC PRIME"' ]
+    hl7Spec: [ '%{MSH}-4-1' ]
+
+  - name: oh-sending-application-universal-id
+    value: [ '"36DSMP9999"' ]
+    hl7Spec: [ '%{MSH}-4-2' ]
+
+  - name: oh-receiving-application-namespace-id
+    value: [ '"OHDOH"' ]
+    hl7Spec: [ '%{MSH}-5-1' ]
+
+  - name: oh-receiving-application-universal-id
+    value: [ '"2.16.840.1.114222.4.1.3674"' ]
+    hl7Spec: [ '%{MSH}-5-2' ]
+
+  - name: oh-receiving-application-universal-id-type
+    value: [ '"ISO"' ]
+    hl7Spec: [ '%{MSH}-5-3' ]
+
+  - name: oh-receiving-facility-namespace-id
+    value: [ '"OHDOH"' ]
+    hl7Spec: [ '%{MSH}-6-1' ]
+
+  - name: oh-receiving-facility-universal-id
+    value: [ '"2.16.840.1.114222.4.1.3674"' ]
+    hl7Spec: [ '%{MSH}-6-2' ]
+
+  - name: oh-receiving-facility-universal-id-type
+    value: [ '"ISO"' ]
+    hl7Spec: [ '%{MSH}-6-3' ]
+
+  - name: oh-unwanted-fields
+    value: [ '""' ]
+    hl7Spec: [ '%{MSH}-19-1', '%{MSH}-19-2', '%{MSH}-19-3' ]
+
+  - name: oh-race-unknown-as-blank
+    resource: 'Bundle.entry.resource.ofType(Patient).extension("http://ibm.com/fhir/cdm/StructureDefinition/local-race-cd")'
+    condition: '%resource.value[x].coding[0].code = "UNK" or %resource.value.coding[0].code = "ASKU"'
+    value: [ '""' ]
+    hl7Spec: [ '%{PID}-10-1' , '%{PID}-10-2' , '%{PID}-10-3' , '%{PID}-10-7' , '%{PID}-10-9' ]
+
+  - name: oh-observation
+    resource: Bundle.entry.resource.ofType(Observation)
+    condition: 'Bundle.entry.resource.ofType(Observation).code.coding.extension("https://reportstream.cdc.gov/fhir/StructureDefinition/condition-code").value.code = "AOE"'
+    schema: classpath:/metadata/hl7_mapping/receivers/STLTs/OH/OH-observation-fields.yml
+    resourceIndex: resultIndex