Readme

Links

Team Neural Network Github Repo Google Drive

Files

• alignment_VT61209.fa - fasta file of nucleotide alignment across 24 species.
• raw_VT61209.fa - raw sequences
• bcd
  • bcd_FlyReg.fm - the occurance of each letter in TFBS
  • bcd_FlyReg.png - What the Postion Weight Matrix of BCD Looks like
• occurance_bcd_VT61209.fa.csv - Using program to map presence of BCD across VT61209
• kvonClassification - different ways to classifcy each enhancer region's function
  • classification_table3_21Aug2018.csv
  • classification_table2_24July2018.csv
  • classification_table1_24July2018.csv

Understanding sequence ID

Example Fasta header:

VT0847|1|MEMB005B|-|2607

• VT0847: Region ID
• 1: positive presence of expression
• MEMB005B: species ID
• -: read from the negative strand
• 2607: length of sequence in bp