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Merge branch 'develop' into mock_pubmed_557 #590

Merge branch 'develop' into mock_pubmed_557

Merge branch 'develop' into mock_pubmed_557 #590

name: Python package
on:
pull_request:
push:
jobs:
build:
runs-on: ubuntu-latest
strategy:
matrix:
python-version: [3.9, '3.10', '3.11', '3.12']
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Download Test Data
run: |
bash -x get_test_data.sh
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install flake8 pytest
if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: Lint with flake8
run: |
# stop the build if there are Python syntax errors or undefined names
flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
- name: Test with python unittest
run: |
behave --no-capture --no-capture-stderr --format=progress features/isa-file-handler.feature
coverage run -m unittest discover -s tests/
coverage report -m
- name: Coveralls
uses: AndreMiras/coveralls-python-action@develop
with:
parallel: true
flag-name: Unit Test
coveralls_finish:
needs: build
runs-on: ubuntu-latest
steps:
- name: Coveralls Finished
uses: AndreMiras/coveralls-python-action@develop
with:
parallel-finished: true