updated doc

KlugerLab · May 5, 2024 · 4452e4b · 4452e4b
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diff --git a/docs/index.md b/docs/index.md
@@ -14,6 +14,12 @@ The development version of the package can be installed as
 pip install gene-trajectory
 ```
 
+If you are planning to run the tool in [Jupyter Notebook](https://jupyter.org/), the additional dependencies can be 
+installed as
+```
+pip install 'gene-trajectory[widgets]'
+```
+
 The development version of the package can be installed as 
 ```
 pip install git+https://github.com/Klugerlab/GeneTrajectory-python.git

diff --git a/docs/notebooks/tutorial_human_myeloid.ipynb b/docs/notebooks/tutorial_human_myeloid.ipynb
@@ -293,7 +293,7 @@
     "- n: the number of trajectories to extract;\n",
     "- t_list: the time step of random walk to extract each trajectory. Increasing each t extracts a longer trajectory.\n",
     "\n",
-    "Here we use optimized parameters. To see how to optimize parameters with a Jupyter Widget, run the Jupyter notebook in [notebooks/tutorial_human_myeloid.ipynb](https://github.com/KlugerLab/GeneTrajectory-python/notebooks/tutorial_human_myeloid.ipynb). \n"
+    "Here we use optimized parameters. To see how to optimize parameters with a Jupyter Widget, run the Jupyter notebook in [notebooks/tutorial_human_myeloid.ipynb](https://github.com/KlugerLab/GeneTrajectory-python/blob/main/notebooks/tutorial_human_myeloid.ipynb). \n"
    ]
   },
   {