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v0.5.0

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@mfansler mfansler released this 28 May 06:16
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What's Changed

  • adds support for H5AD (AnnData) output by with #90
  • adds support for Snakemake 8 with in #83
  • updates environments to R 4.3 and Bioc 3.18 with #86
  • freshens up the Rmd output with #89
  • adds a version variable to the Snakefile with #89

Specification Extensions

  • configuration YAML: there is now a output_format key that takes a list, currently limited to "sce" (default) and "h5ad" (experimental).
  • target definition: targets have two new (optional) keys - tx_annots_csv and gene_annots_csv
    These are exclusively used by the output_format: h5ad branch of the pipeline.

Full Changelog: v0.4.1...v0.5.0