Add IsoSeq images #21
Open
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Version 2.5.0, used in TargetEnrichment, does not add the SOURCE field to the RG for segmented reads; this is fixed in v2.7.1.
Handles Revio data
Singularity runs as non-root
There was a problem hiding this comment.
samtools/isoseq and samtools/humanwgs are the same, except for version. We could probably get away with a single image to support both. We just need to test the new version within the context of wdl-humanwgs.
There was a problem hiding this comment.
As far as I can tell, the difference between lima/isoseq and lima/targetenrichment is just lima version. 2.5 vs 2.7. Maybe worth checking whether the newest is compatible with both?
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Images used by the IsoSeq pipeline