DOC add source code links in API refs (close #27)

ZhiningLiu1998 · Mar 3, 2023 · 9c2e612 · 9c2e612
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Showing 65 changed files with 333 additions and 118 deletions.
diff --git a/docs/source/auto_examples/auto_examples_jupyter.zip b/docs/source/auto_examples/auto_examples_jupyter.zip
diff --git a/docs/source/auto_examples/auto_examples_python.zip b/docs/source/auto_examples/auto_examples_python.zip
diff --git a/docs/source/auto_examples/basic/plot_basic_example.rst b/docs/source/auto_examples/basic/plot_basic_example.rst
@@ -298,7 +298,7 @@ Enable training log
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.679 seconds)
+   **Total running time of the script:** ( 0 minutes  0.895 seconds)
 
 
 .. _sphx_glr_download_auto_examples_basic_plot_basic_example.py:

diff --git a/docs/source/auto_examples/basic/plot_basic_example_codeobj.pickle b/docs/source/auto_examples/basic/plot_basic_example_codeobj.pickle
diff --git a/docs/source/auto_examples/basic/plot_basic_visualize.rst b/docs/source/auto_examples/basic/plot_basic_visualize.rst
@@ -167,11 +167,11 @@ Fit an ImbalancedEnsembleVisualizer
 
  .. code-block:: none
 
-      0%|                                                                                                                                                                                                    | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset  training  ::   0%|                                                                                                                                           | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset  training  :: 100%|################################################################################################################################| 50/50 [00:00<00:00, 2206.76it/s]
-      0%|                                                                                                                                                                                                    | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset validation ::   0%|                                                                                                                                           | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset validation :: 100%|################################################################################################################################| 50/50 [00:00<00:00, 2351.15it/s]
+      0%|                                                                                                                                                                                                                       | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset  training  ::   0%|                                                                                                                                                              | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset  training  :: 100%|###################################################################################################################################################| 50/50 [00:00<00:00, 1562.61it/s]
+      0%|                                                                                                                                                                                                                       | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset validation ::   0%|                                                                                                                                                              | 0/50 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset validation :: 100%|###################################################################################################################################################| 50/50 [00:00<00:00, 1490.98it/s]
     Visualizer computing confusion matrices.. Finished!
 
-    <imbens.visualizer.visualizer.ImbalancedEnsembleVisualizer object at 0x0000014D4B39F100>
+    <imbens.visualizer.visualizer.ImbalancedEnsembleVisualizer object at 0x00000176110998B0>
 
 
 
@@ -229,7 +229,7 @@ Plot confusion matrix
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.491 seconds)
+   **Total running time of the script:** ( 0 minutes  0.659 seconds)
 
 
 .. _sphx_glr_download_auto_examples_basic_plot_basic_visualize.py:

diff --git a/docs/source/auto_examples/basic/plot_basic_visualize_codeobj.pickle b/docs/source/auto_examples/basic/plot_basic_visualize_codeobj.pickle
diff --git a/docs/source/auto_examples/basic/plot_training_log.rst b/docs/source/auto_examples/basic/plot_training_log.rst
diff --git a/docs/source/auto_examples/basic/plot_training_log_codeobj.pickle b/docs/source/auto_examples/basic/plot_training_log_codeobj.pickle
diff --git a/docs/source/auto_examples/basic/sg_execution_times.rst b/docs/source/auto_examples/basic/sg_execution_times.rst
@@ -5,12 +5,12 @@
 
 Computation times
 =================
-**00:02.265** total execution time for **auto_examples_basic** files:
+**00:02.831** total execution time for **auto_examples_basic** files:
 
 +-------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_basic_plot_training_log.py` (``plot_training_log.py``)       | 00:01.094 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_basic_plot_training_log.py` (``plot_training_log.py``)       | 00:01.278 | 0.0 MB |
 +-------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_basic_plot_basic_example.py` (``plot_basic_example.py``)     | 00:00.679 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_basic_plot_basic_example.py` (``plot_basic_example.py``)     | 00:00.895 | 0.0 MB |
 +-------------------------------------------------------------------------------------------+-----------+--------+
-| :ref:`sphx_glr_auto_examples_basic_plot_basic_visualize.py` (``plot_basic_visualize.py``) | 00:00.491 | 0.0 MB |
+| :ref:`sphx_glr_auto_examples_basic_plot_basic_visualize.py` (``plot_basic_visualize.py``) | 00:00.659 | 0.0 MB |
 +-------------------------------------------------------------------------------------------+-----------+--------+
diff --git a/docs/source/auto_examples/classification/images/sphx_glr_plot_digits_005.png b/docs/source/auto_examples/classification/images/sphx_glr_plot_digits_005.png
diff --git a/docs/source/auto_examples/classification/images/sphx_glr_plot_probability_001.png b/docs/source/auto_examples/classification/images/sphx_glr_plot_probability_001.png
diff --git a/docs/source/auto_examples/classification/images/sphx_glr_plot_torch_001.png b/docs/source/auto_examples/classification/images/sphx_glr_plot_torch_001.png
diff --git a/...e/auto_examples/classification/images/thumb/sphx_glr_plot_probability_thumb.png b/...e/auto_examples/classification/images/thumb/sphx_glr_plot_probability_thumb.png
diff --git a/.../source/auto_examples/classification/images/thumb/sphx_glr_plot_torch_thumb.png b/.../source/auto_examples/classification/images/thumb/sphx_glr_plot_torch_thumb.png
diff --git a/docs/source/auto_examples/classification/plot_classifier_comparison.rst b/docs/source/auto_examples/classification/plot_classifier_comparison.rst
@@ -398,7 +398,7 @@ Compare all reweighting-based ensemble algorithms
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  4.641 seconds)
+   **Total running time of the script:** ( 0 minutes  5.478 seconds)
 
 
 .. _sphx_glr_download_auto_examples_classification_plot_classifier_comparison.py:

diff --git a/docs/source/auto_examples/classification/plot_classifier_comparison_codeobj.pickle b/docs/source/auto_examples/classification/plot_classifier_comparison_codeobj.pickle
diff --git a/docs/source/auto_examples/classification/plot_cost_matrix.rst b/docs/source/auto_examples/classification/plot_cost_matrix.rst
@@ -472,7 +472,7 @@ Visualize All Used Cost Matrices
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.655 seconds)
+   **Total running time of the script:** ( 0 minutes  0.842 seconds)
 
 
 .. _sphx_glr_download_auto_examples_classification_plot_cost_matrix.py:

diff --git a/docs/source/auto_examples/classification/plot_cost_matrix_codeobj.pickle b/docs/source/auto_examples/classification/plot_cost_matrix_codeobj.pickle
diff --git a/docs/source/auto_examples/classification/plot_digits.rst b/docs/source/auto_examples/classification/plot_digits.rst
@@ -241,22 +241,22 @@ The fitted classifier can subsequently be used to predict the value of the digit
 
     Classification report for classifier SelfPacedEnsembleClassifier(estimator=SVC(gamma=0.001, probability=True),
                                 n_estimators=5,
-                                random_state=RandomState(MT19937) at 0x14D4217F040):
+                                random_state=RandomState(MT19937) at 0x1760814F040):
                   precision    recall  f1-score   support
 
                0       1.00      1.00      1.00        89
-               1       0.92      1.00      0.96        60
-               2       1.00      0.97      0.99        40
+               1       0.94      1.00      0.97        60
+               2       1.00      0.95      0.97        40
                3       1.00      0.90      0.95        30
                4       1.00      0.96      0.98        25
                5       0.95      0.95      0.95        22
                6       1.00      1.00      1.00        20
-               7       0.90      0.95      0.93        20
-               8       0.90      0.90      0.90        20
+               7       0.86      0.95      0.90        20
+               8       0.86      0.90      0.88        20
                9       0.95      0.90      0.92        20
 
         accuracy                           0.97       346
-       macro avg       0.96      0.95      0.96       346
+       macro avg       0.96      0.95      0.95       346
     weighted avg       0.97      0.97      0.97       346
 
 
@@ -325,7 +325,7 @@ We can also plot a confusion matrix of the true digit values and the predicted d
 
  .. code-block:: none
 
-      0%|                                                                                                                                                                                                     | 0/5 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset test ::   0%|                                                                                                                                                  | 0/5 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset test :: 100%|##########################################################################################################################################| 5/5 [00:00<00:00, 59.86it/s]
+      0%|                                                                                                                                                                                                                        | 0/5 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset test ::   0%|                                                                                                                                                                     | 0/5 [00:00<?, ?it/s]    Visualizer evaluating model SPE on dataset test :: 100%|#############################################################################################################################################################| 5/5 [00:00<00:00, 58.45it/s]
     Visualizer computing confusion matrices. Finished!
 
 
@@ -334,7 +334,7 @@ We can also plot a confusion matrix of the true digit values and the predicted d
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.385 seconds)
+   **Total running time of the script:** ( 0 minutes  1.194 seconds)
 
 
 .. _sphx_glr_download_auto_examples_classification_plot_digits.py:

diff --git a/docs/source/auto_examples/classification/plot_digits_codeobj.pickle b/docs/source/auto_examples/classification/plot_digits_codeobj.pickle
diff --git a/docs/source/auto_examples/classification/plot_probability.rst b/docs/source/auto_examples/classification/plot_probability.rst
@@ -212,17 +212,17 @@ Plot classification probabilities
 
  .. code-block:: none
 
-    Balanced Accuracy (train) for SPE-DT: 84.9% 
-    Balanced Accuracy (train) for SPE-SVM-rbf: 77.8% 
-    Balanced Accuracy (train) for SPE-GPC: 85.6% 
+    Balanced Accuracy (train) for SPE-DT: 92.2% 
+    Balanced Accuracy (train) for SPE-SVM-rbf: 78.9% 
+    Balanced Accuracy (train) for SPE-GPC: 81.1% 
 
 
 
 
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  0.622 seconds)
+   **Total running time of the script:** ( 0 minutes  0.711 seconds)
 
 
 .. _sphx_glr_download_auto_examples_classification_plot_probability.py:

diff --git a/docs/source/auto_examples/classification/plot_probability_codeobj.pickle b/docs/source/auto_examples/classification/plot_probability_codeobj.pickle
diff --git a/docs/source/auto_examples/classification/plot_resampling_target.rst b/docs/source/auto_examples/classification/plot_resampling_target.rst
@@ -646,7 +646,7 @@ Visualize different resampling target
 
 .. rst-class:: sphx-glr-timing
 
-   **Total running time of the script:** ( 0 minutes  1.163 seconds)
+   **Total running time of the script:** ( 0 minutes  1.588 seconds)
 
 
 .. _sphx_glr_download_auto_examples_classification_plot_resampling_target.py:

diff --git a/docs/source/auto_examples/classification/plot_resampling_target_codeobj.pickle b/docs/source/auto_examples/classification/plot_resampling_target_codeobj.pickle