SCRUM-3952: change vocabularyterm to ontologyterm after LinkML change #3658
Workflow file for this run
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| name: PR validation | |
| on: | |
| pull_request: | |
| types: [synchronize, opened, reopened, edited] | |
| branches: | |
| - alpha | |
| - beta | |
| - production | |
| jobs: | |
| check-branching-rules: | |
| name: Check Branching Rules | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check branching rules | |
| run: | | |
| bash ci-scripts/check-branching.sh ${{ github.base_ref }} ${{ github.head_ref }} | |
| checkstyle-api: | |
| name: Checkstyle API | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - run: cp src/main/resources/application.properties.defaults src/main/resources/application.properties | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - name: Report Maven version | |
| run: | | |
| mvn --version | |
| - name: Run Check Styles | |
| run: | | |
| mvn -ntp checkstyle:check | |
| verify-api: | |
| name: Verify API | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - run: cp src/main/resources/application.properties.defaults src/main/resources/application.properties | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - id: install-secret-key | |
| name: Install gpg secret key | |
| run: | | |
| cat <(echo -e "${{ secrets.OSSRH_GPG_SECRET_KEY }}") | gpg --batch --import | |
| gpg --list-secret-keys --keyid-format LONG | |
| - name: Report Maven version | |
| run: | | |
| mvn --version | |
| - name: Run Maven verify | |
| run: | | |
| mvn -ntp --batch-mode --update-snapshots verify | |
| test-api: | |
| name: Test API | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - run: cp src/main/resources/application.properties.defaults src/main/resources/application.properties | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - name: Report Maven version | |
| run: | | |
| mvn --version | |
| - name: Run Maven test | |
| run: | | |
| mvn -ntp test | |
| package-api: | |
| name: Package API | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - run: cp src/main/resources/application.properties.defaults src/main/resources/application.properties | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - name: Report Maven version | |
| run: | | |
| mvn --version | |
| - name: Package API | |
| run: | | |
| mvn -ntp clean package -Dquarkus.package.type=uber-jar -ntp | |
| integration-test-api: | |
| name: Integration Test API | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - run: cp src/main/resources/application.properties.defaults src/main/resources/application.properties | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Set up JDK 17 | |
| uses: actions/setup-java@v4 | |
| with: | |
| java-version: '17' | |
| distribution: 'temurin' | |
| - name: Report runtime details | |
| run: | | |
| echo "Github runner OS: ${{ runner.os }}" | |
| - name: Report Maven version | |
| run: | | |
| mvn --version | |
| - name: Create test containers properties file | |
| run: | | |
| touch ~/.testcontainers.properties | |
| - name: Run Integration tests | |
| run: | | |
| make integration-test | |
| verify-test-ui: | |
| name: Verify Test UI | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Report workflow details | |
| run: | | |
| echo "Repository ${{ github.repository }}." | |
| echo "Trigger ref ${{ github.ref }}, base-ref ${{ github.base_ref }}, head_ref ${{ github.head_ref }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Report files updated in PR | |
| run: | | |
| git fetch -q origin ${{ github.base_ref }} ${{ github.head_ref }} | |
| git diff --name-only origin/${{ github.base_ref }} origin/${{ github.head_ref }} | |
| - name: Setup Node.js (v18) | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: 18 | |
| - name: Report Node version | |
| run: | | |
| node -v | |
| - name: Run UI Tests and Build | |
| working-directory: src/main/cliapp | |
| run: | | |
| npm ci | |
| npx prettier --check . | |
| npm test -- --watchAll=false | |
| npm run build | |
| test-build-docker-image: | |
| name: Test Build Docker Image | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v3 | |
| - name: Build docker image | |
| env: | |
| ECR_REPOSITORY: agr_curation | |
| IMAGE_TAG: ${{ github.sha }} | |
| run: docker build -t $ECR_REPOSITORY:$IMAGE_TAG . |