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Releases: andreped/livermask

v1.5.0

24 May 17:11
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What's Changed

  • Added test demo app for HuggingFace space by @andreped in #22
  • Added deploy (CD) and filesize (CI) workflows relevant for HF space by @andreped in #23
  • Experimental support for using livermask as Python package

Full Changelog: https://github.com/andreped/livermask/commits/v1.5.0

v1.4.1

26 Jan 22:57
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What's changed

  • Added *.nii.gz file extension support by @jpdefrutos in #20
  • Fixed file extension check by @jpdefrutos in #21
  • Added unit tests for *.nii.gz format in test CI
  • Bug fix related to liver parenchyma masks with only one (or none) connected components

New Contributors

Full Changelog: v1.4.0...v1.4.1

v1.4.0

16 Dec 20:16
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What's changed

  • Bug fix related to model downloading from Google Drive #15
  • Switched gdown for large model with custom HTTP + GitHub Releases solution.
  • Improved CI to use compiled wheel instead of PyPI release during testing.

Full Changelog: v1.3.1...v1.4.0

trained-models-v1

16 Dec 17:29
01356aa
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This release simple makes the pretrained models available through GitHub Releases.

This was made due to instabilities using Google Drive with large files.

v1.3.1

31 Dec 17:59
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Minor bug fixes mostly relevant for macOSX, but fixed a critical bug related to the vessel model.

Changes:

  • Included yaml-file as dependency, as it was not included before
  • Updated path to yaml-file to work across operating systems
  • Changed multiprocessing start method to "spawn" to work with macOSX
  • Livermask now works without having CuPy installed and without needing to specify "--cpu" flag

Full Changelog: v1.3.0...v1.3.1

v1.3.0

10 Dec 20:12
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Changes:

  • Added option for vessel segmentation (hepatic vascular system)
  • Added pretrained deep vessel model
  • Added Chainer and CuPy as dependencies, to support new model
  • Added both CPU and GPU support for new model
  • Fixed such that two models can be run sequentially, without GPU memory leakage
  • Major refactoring

Full Changelog: v1.2.0...v1.3.0

v1.3.0-alpha

27 Oct 08:17
d6feb24
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v1.3.0-alpha Pre-release
Pre-release
Update README.md

v1.2.0

22 Oct 17:53
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Changes:

  • Bug fix related to file extension check, see here
  • Reduced memory consumption when post-processing the prediction
  • Change order for correction backwards slashes to be properly used in the initial checks

v1.1.0

08 Oct 10:11
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Changes:

  • Added support for batch mode (now supports providing directory as input)
  • Added build as workflow, to test build on three OS for each push using GitHub Actions.
  • Added alternative python wheel for install with release

v1.0.0

10 Sep 17:29
71f6d27
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First major release of the livermask command line tool.

Features:

  • Simply use pip to install the program
  • The program can then be used as a command line tool
  • Supports and has been tested on Ubuntu Linux, Windows, and macOS
  • Supports inference using a dedicated graphics card (NVIDIA)
  • Automatically runs inference on GPU if GPU is available
  • Option to force computation on CPU (if GPU resources are sparse)