This script is a quick way to initiate multiple import or export workflow commands by running just 1 command. The workflows and their corresponding manifest / configuration file name are set in a .cfg file.
The export will initiate 2 commands:
- custom manifest generation .txt
- export into configuration file .xml
sh configslicer_help.sg ./<config_file> <export|import> ./<file_directory>
<file_name>=""
wf_receive="FFPE Receiving v1.0.0"
wf_quantification="RNA Quantification v1.0.0"