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Bump pynwb from 2.2.0 to 2.3.3 #15

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@dependabot dependabot bot commented on behalf of github Jul 10, 2023

Bumps pynwb from 2.2.0 to 2.3.3.

Release notes

Sourced from pynwb's releases.

2.3.3

No release notes provided.

2.3.2

PyNWB 2.3.2 (April 10, 2023)

Enhancements and minor changes

  • Fixed typos and added codespell GitHub action to check spelling in the future. @​yarikoptic #1648

Documentation and tutorial enhancements

Bug fixes

  • Fixed bug when initializing OnePhotonSeries with no value for binning. @​bendichter #1660
  • Fixed bug in NWBHDF5IO.nwb_version property to support files written by third-party software with a fixed-length nwb_version attribute. @​oruebel #1669
  • Fixed search bar and missing jquery in ReadTheDocs documentation. @​rly #1671
  • Requires HDMF 3.5.4 which includes bug fixes. @​rly #1672
  • Fixed issue with deprecated pkg_resources. @​rly #1678

2.3.1

PyNWB 2.3.1 (February 24, 2023)

Bug fixes

  • Fixed an issue where NWB files with version "2.0b" could not be read. @​rly #1651

2.3.0

PyNWB 2.3.0 (February 23, 2023)

Enhancements and minor changes

  • Added support for NWB Schema 2.6.0. @​mavaylon1 #1636
  • Added a class and tests for the OnePhotonSeries new in NWB v2.6.0. @​CodyCBakerPhD #1593(see also NWB Schema #523
  • Subject.age can be input as a timedelta type. @​bendichter #1590
  • Added Subject.age__reference field. @​bendichter (#1540)
  • IntracellularRecordingsTable.add_recording: the electrode arg is now optional, and is automatically populated from the stimulus or response. #1597
  • Added module pynwb.testing.mock.icephys and corresponding tests. @​bendichter 1595
  • Removed redundant object mapper code. @​rly #1600
  • Fixed pending deprecations and issues in CI. @​rly #1594
  • Added NWBHDF5IO.nwb_version property to get the NWB version from an NWB HDF5 file @​oruebel #1612
  • Updated NWBHDF5IO.read to check NWB version before read and raise more informative error if an unsupported version is found @​oruebel #1612
  • Added the driver keyword argument to the pynwb.validate function as well as the corresponding namespace caching. @​CodyCBakerPhD #1588
  • Updated HDMF requirement to version 3.5.1. #1611
  • Increased the stacklevel of the warning from _add_missing_timezone in pynwb.file to make identification of which datetime field is missing a timezone easier. @​CodyCBakerPhD #1641

... (truncated)

Changelog

Sourced from pynwb's changelog.

PyNWB 2.3.3 (June 26, 2023)

Enhancements and minor changes

Bug fixes

  • Remove unused, deprecated codecov package from dev installation requirements. @​rly #1688
  • Remove references to discontinued requires.io service in documentation. @​rly #1690
  • Update requirements-doc.txt to resolve Python 3.7 incompatibility. @​rly #1694
  • Fixed test battery to show and check for warnings appropriately. @​rly #1698

PyNWB 2.3.2 (April 10, 2023)

Enhancements and minor changes

  • Fixed typos and added codespell GitHub action to check spelling in the future. @​yarikoptic #1648

Documentation and tutorial enhancements

Bug fixes

  • Fixed bug when initializing OnePhotonSeries with no value for binning. @​bendichter #1660
  • Fixed bug in NWBHDF5IO.nwb_version property to support files written by third-party software with a fixed-length nwb_version attribute. @​oruebel #1669
  • Fixed search bar and missing jquery in ReadTheDocs documentation. @​rly #1671
  • Requires HDMF 3.5.4 which includes bug fixes. @​rly #1672
  • Fixed issue with deprecated pkg_resources. @​rly #1678

PyNWB 2.3.1 (February 24, 2023)

Bug fixes

  • Fixed an issue where NWB files with version "2.0b" could not be read. @​rly #1651

PyNWB 2.3.0 (February 23, 2023)

Enhancements and minor changes

  • Added support for NWB Schema 2.6.0. @​mavaylon1 #1636
  • Added a class and tests for the OnePhotonSeries new in NWB v2.6.0. @​CodyCBakerPhD #1593(see also NWB Schema #523
  • Subject.age can be input as a timedelta type. @​bendichter #1590
  • Added Subject.age__reference field. @​bendichter (#1540)
  • IntracellularRecordingsTable.add_recording: the electrode arg is now optional, and is automatically populated from the stimulus or response. #1597

... (truncated)

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@dependabot dependabot bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jul 10, 2023
@dependabot dependabot bot force-pushed the dependabot/pip/pynwb-2.3.3 branch from ce01fe0 to ef3ac0e Compare July 10, 2023 06:47
Bumps [pynwb](https://github.com/NeurodataWithoutBorders/pynwb) from 2.2.0 to 2.3.3.
- [Release notes](https://github.com/NeurodataWithoutBorders/pynwb/releases)
- [Changelog](https://github.com/NeurodataWithoutBorders/pynwb/blob/dev/CHANGELOG.md)
- [Commits](NeurodataWithoutBorders/pynwb@2.2.0...2.3.3)

---
updated-dependencies:
- dependency-name: pynwb
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot force-pushed the dependabot/pip/pynwb-2.3.3 branch from ef3ac0e to ceb8cd8 Compare July 10, 2023 06:48
@ReiHashimoto
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@dependabot ignore this major version

@dependabot dependabot bot closed this Jul 10, 2023
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dependabot bot commented on behalf of github Jul 10, 2023

OK, I won't notify you about version 2.x.x again, unless you re-open this PR. 😢

@dependabot dependabot bot deleted the dependabot/pip/pynwb-2.3.3 branch July 10, 2023 06:56
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