ehdn-paper-analysis

This is the analysis for the paper: ExpansionHunter Denovo ______

Subsections

This directory contains scripts to generate pbs scripts to realign Polaris cohorts and run RE methods to compare results.

This directory contains the comparison between STR catalogues using Intervene.

This directory contains the scripts for simulating STRs, and calling them from simulated BAM files.

Name		Name	Last commit message	Last commit date
Latest commit History 31 Commits
CompareSTRDatabases		CompareSTRDatabases
PolarisCohortAnalysis		PolarisCohortAnalysis
STR_Simulation		STR_Simulation
SimulationOutputs		SimulationOutputs
baseline-simulations		baseline-simulations
case-control		case-control
compare_aligners		compare_aligners
polaris_bwamem		polaris_bwamem
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
expressed_brain.extended.sorted.bed		expressed_brain.extended.sorted.bed
expressed_brain.sorted.bed		expressed_brain.sorted.bed