AB#123595 Feat: Update critical vulnerability in certifi (#1340)

* AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi * AB#123595 Feat: Update critical vulnerability in certifi
equinor · Sep 5, 2023 · 7947985 · 7947985
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commit 7947985
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Showing 10 changed files with 191 additions and 135 deletions.
diff --git a/Makefile b/Makefile
@@ -84,7 +84,7 @@ scan:
 	echo "Trivy version is $${TRIVY_VERSION} and platform is $${uname_S}"; \
 	for i in $$images; do \
 		echo "Scanning image - '$$i'"; \
-		$$trivy --clear-cache && $$trivy --exit-code 1 -severity HIGH,CRITICAL --light --no-progress --ignore-unfixed "$$i"; \
+		$$trivy --clear-cache && $$trivy --exit-code 1 --severity HIGH,CRITICAL --no-progress --ignore-unfixed "$$i"; \
 	done; \
 
 # Make the python source distribution

diff --git a/examples/Pipelines-with-Gordo.ipynb b/examples/Pipelines-with-Gordo.ipynb
@@ -122,8 +122,7 @@
       "      random_state: null\n",
       "      verbose: 0\n",
       "      warm_start: false\n",
-      "  verbose: false\n",
-      "\n"
+      "  verbose: false\n"
      ]
     }
    ],
@@ -178,7 +177,7 @@
     "from gordo.serializer import from_definition\n",
     "\n",
     "\n",
-    "pipe = from_definition(yaml.load(yaml_definition_of_pipeline))\n",
+    "pipe = from_definition(yaml.load(yaml_definition_of_pipeline, Loader=yaml.FullLoader))\n",
     "pprint(pipe.steps)"
    ]
   },

diff --git a/mypy.ini b/mypy.ini
@@ -3,4 +3,5 @@
 [mypy]
 python_version = 3.9
 ignore_missing_imports = True
+no_implicit_optional = False
 plugins = numpy.typing.mypy_plugin
diff --git a/requirements/docs_requirements.in b/requirements/docs_requirements.in
@@ -1,7 +1,7 @@
-sphinx~=6.2
+sphinx~=7.2
 sphinx-autobuild~=2021.3
 sphinx-copybutton~=0.5
-furo~=2023.5
+furo~=2023.8
 sphinx-click~=4.4
 ipython~=8.13
 nbsphinx~=0.9
diff --git a/requirements/full_requirements.txt b/requirements/full_requirements.txt
@@ -2,7 +2,7 @@
 # This file is autogenerated by pip-compile with Python 3.10
 # by the following command:
 #
-#    pip-compile --output-file=full_requirements.txt mlflow_requirements.in postgres_requirements.in requirements.in
+#    pip-compile --no-emit-index-url --output-file=full_requirements.txt mlflow_requirements.in postgres_requirements.in requirements.in
 #
 absl-py==1.4.0
     # via
@@ -12,7 +12,7 @@ adal==1.2.7
     # via
     #   azureml-core
     #   msrestazure
-alembic==1.11.1
+alembic==1.12.0
     # via mlflow
 argcomplete==2.1.2
     # via
@@ -26,10 +26,11 @@ azure-common==1.1.28
     #   azure-mgmt-authorization
     #   azure-mgmt-containerregistry
     #   azure-mgmt-keyvault
+    #   azure-mgmt-network
     #   azure-mgmt-resource
     #   azure-mgmt-storage
     #   azureml-core
-azure-core==1.28.0
+azure-core==1.29.1
     # via
     #   azure-mgmt-core
     #   azureml-core
@@ -45,15 +46,18 @@ azure-mgmt-core==1.4.0
     #   azure-mgmt-authorization
     #   azure-mgmt-containerregistry
     #   azure-mgmt-keyvault
+    #   azure-mgmt-network
     #   azure-mgmt-resource
     #   azure-mgmt-storage
-azure-mgmt-keyvault==10.2.2
+azure-mgmt-keyvault==10.2.3
+    # via azureml-core
+azure-mgmt-network==21.0.1
     # via azureml-core
 azure-mgmt-resource==22.0.0
     # via azureml-core
 azure-mgmt-storage==21.0.0
     # via azureml-core
-azureml-core==1.52.0
+azureml-core==1.53.0
     # via -r mlflow_requirements.in
 backports-tempfile==1.0
     # via azureml-core
@@ -69,7 +73,7 @@ cachetools==5.3.1
     #   gordo-core
 catboost==1.1.1
     # via -r requirements.in
-certifi==2023.5.7
+certifi==2023.7.22
     # via
     #   msrest
     #   requests
@@ -79,7 +83,7 @@ cffi==1.15.1
     #   pynacl
 charset-normalizer==3.2.0
     # via requests
-click==8.1.5
+click==8.1.7
     # via
     #   databricks-cli
     #   flask
@@ -91,7 +95,7 @@ contextlib2==21.6.0
     # via azureml-core
 contourpy==1.1.0
     # via matplotlib
-cryptography==41.0.2
+cryptography==41.0.3
     # via
     #   adal
     #   azureml-core
@@ -104,7 +108,7 @@ cycler==0.11.0
     # via matplotlib
 databricks-cli==0.17.7
     # via mlflow
-dataclasses-json==0.5.12
+dataclasses-json==0.5.14
     # via -r requirements.in
 dictdiffer==0.9.0
     # via -r requirements.in
@@ -114,19 +118,19 @@ docker==6.1.3
     #   mlflow
 entrypoints==0.4
     # via mlflow
-flask==2.3.2
+flask==2.3.3
     # via
     #   -r requirements.in
     #   mlflow
 flatbuffers==23.5.26
     # via tensorflow
-fonttools==4.41.0
+fonttools==4.42.1
     # via matplotlib
 gast==0.4.0
     # via tensorflow
 gitdb==4.0.10
     # via gitpython
-gitpython==3.1.32
+gitpython==3.1.34
     # via mlflow
 google-auth==2.22.0
     # via
@@ -136,15 +140,15 @@ google-auth-oauthlib==1.0.0
     # via tensorboard
 google-pasta==0.2.0
     # via tensorflow
-gordo-client==6.2.3
+gordo-client==6.2.5
     # via -r requirements.in
-gordo-core==0.3.2
+gordo-core==0.3.3
     # via gordo-client
 graphviz==0.20.1
     # via catboost
 greenlet==2.0.2
     # via sqlalchemy
-grpcio==1.56.0
+grpcio==1.57.0
     # via
     #   tensorboard
     #   tensorflow
@@ -170,7 +174,7 @@ isodate==0.6.1
     #   msrest
 itsdangerous==2.1.2
     # via flask
-jax==0.4.13
+jax==0.4.14
     # via tensorflow
 jeepney==0.8.0
     # via secretstorage
@@ -183,21 +187,21 @@ jmespath==1.0.1
     # via
     #   azureml-core
     #   knack
-joblib==1.3.1
+joblib==1.3.2
     # via scikit-learn
-jsonpickle==3.0.1
+jsonpickle==3.0.2
     # via azureml-core
 keras==2.12.0
     # via tensorflow
-kiwisolver==1.4.4
+kiwisolver==1.4.5
     # via matplotlib
 knack==0.10.1
     # via azureml-core
 libclang==16.0.6
     # via tensorflow
 mako==1.2.4
     # via alembic
-markdown==3.4.3
+markdown==3.4.4
     # via
     #   mlflow
     #   tensorboard
@@ -206,17 +210,17 @@ markupsafe==2.1.3
     #   jinja2
     #   mako
     #   werkzeug
-marshmallow==3.19.0
+marshmallow==3.20.1
     # via dataclasses-json
 matplotlib==3.7.2
     # via
     #   catboost
     #   mlflow
 ml-dtypes==0.2.0
     # via jax
-mlflow==2.5.0
+mlflow==2.6.0
     # via -r mlflow_requirements.in
-msal==1.22.0
+msal==1.23.0
     # via
     #   azureml-core
     #   msal-extensions
@@ -229,6 +233,7 @@ msrest==0.7.1
     #   azure-graphrbac
     #   azure-mgmt-authorization
     #   azure-mgmt-containerregistry
+    #   azure-mgmt-network
     #   azure-mgmt-resource
     #   azure-mgmt-storage
     #   azureml-core
@@ -241,7 +246,7 @@ mypy-extensions==1.0.0
     # via typing-inspect
 ndg-httpsclient==0.5.1
     # via azureml-core
-numexpr==2.8.4
+numexpr==2.8.5
     # via gordo-core
 numpy==1.24.3
     # via
@@ -287,28 +292,28 @@ pandas==1.5.3
     #   gordo-core
     #   mlflow
     #   xarray
-paramiko==3.2.0
+paramiko==3.3.1
     # via azureml-core
-pathspec==0.11.1
+pathspec==0.11.2
     # via azureml-core
-peewee==3.16.2
+peewee==3.16.3
     # via -r postgres_requirements.in
 pillow==10.0.0
     # via matplotlib
 pkginfo==1.9.6
     # via azureml-core
-plotly==5.15.0
+plotly==5.16.1
     # via catboost
 portalocker==2.7.0
     # via msal-extensions
 prometheus-client==0.17.1
     # via -r requirements.in
-protobuf==4.23.4
+protobuf==4.24.2
     # via
     #   mlflow
     #   tensorboard
     #   tensorflow
-psycopg2-binary==2.9.6
+psycopg2-binary==2.9.7
     # via -r postgres_requirements.in
 pyarrow==10.0.1
     # via
@@ -323,11 +328,11 @@ pyasn1-modules==0.3.0
     # via google-auth
 pycparser==2.21
     # via cffi
-pydantic==1.10.11
+pydantic==1.10.12
     # via gordo-client
-pygments==2.15.1
+pygments==2.16.1
     # via knack
-pyjwt[crypto]==2.7.0
+pyjwt[crypto]==2.8.0
     # via
     #   adal
     #   azureml-core
@@ -390,7 +395,7 @@ scikit-learn==1.3.0
     # via
     #   gordo-core
     #   mlflow
-scipy==1.11.1
+scipy==1.11.2
     # via
     #   catboost
     #   jax
@@ -418,7 +423,7 @@ six==1.16.0
     #   tensorflow
 smmap==5.0.0
     # via gitdb
-sqlalchemy==2.0.19
+sqlalchemy==2.0.20
     # via
     #   alembic
     #   mlflow
@@ -428,7 +433,7 @@ tabulate==0.9.0
     # via
     #   databricks-cli
     #   knack
-tenacity==8.2.2
+tenacity==8.2.3
     # via plotly
 tensorboard==2.12.3
     # via tensorflow
@@ -438,7 +443,7 @@ tensorflow==2.12.1
     # via -r requirements.in
 tensorflow-estimator==2.12.0
     # via tensorflow
-tensorflow-io-gcs-filesystem==0.32.0
+tensorflow-io-gcs-filesystem==0.33.0
     # via tensorflow
 termcolor==2.3.0
     # via tensorflow
@@ -461,21 +466,21 @@ urllib3==1.26.16
     #   docker
     #   google-auth
     #   requests
-websocket-client==1.6.1
+websocket-client==1.6.2
     # via docker
-werkzeug==2.3.6
+werkzeug==2.3.7
     # via
     #   flask
     #   tensorboard
-wheel==0.40.0
+wheel==0.41.2
     # via
     #   astunparse
     #   tensorboard
 wrapt==1.14.1
     # via
     #   gordo-client
     #   tensorflow
-xarray==2023.7.0
+xarray==2023.8.0
     # via gordo-core
 zipp==3.16.2
     # via importlib-metadata