Merge pull request #54 from fhdsl/season4

Season4 updates
fhdsl · Sep 19, 2024 · ea700c7 · ea700c7
2 parents 878bc15 + 75eb45a
commit ea700c7
Show file tree

Hide file tree

Showing 997 changed files with 13,934 additions and 169,628 deletions.
diff --git a/docs/index.md → 00-course-info.Rmd b/docs/index.md → 00-course-info.Rmd
@@ -1,21 +1,8 @@
----
-title: "Introduction to R"
-date: "September, 2024"
-site: bookdown::bookdown_site
-documentclass: book
-bibliography: [book.bib]
-biblio-style: apalike
-link-citations: yes
-description: ""
-favicon: assets/dasl_favicon.ico
-output:
-    bookdown::word_document2:
-      toc: true
----
-
 # Course Logistics and Expectations
 
-
+```{r setup, include=FALSE}
+knitr::opts_chunk$set(echo = TRUE)
+```
 
 ## Course Description
 
@@ -84,9 +71,12 @@ Learning R can be difficult at first—it's like learning a new language, just l
 
 Even experienced programmers find themselves bashing their heads against seemingly intractable errors. If you're finding yourself taking way too long hitting your head against a wall and not understanding, take a break, talk to classmates, e-mail me, etc. 
 
-![](images/hosrt_error_tweet.png){width=60%}
+```{r echo=FALSE, out.width="60%"}
+# https://twitter.com/allison_horst/status/1213275783675822080
+knitr::include_graphics("/images/hosrt_error_tweet.png", error = FALSE)
+```
 
-[![Alison Horst: Gator error](images/gator_error.jpg)](https://twitter.com/allison_horst/status/1213275783675822080)
+[![Alison Horst: Gator error](/images/gator_error.jpg)](https://twitter.com/allison_horst/status/1213275783675822080)
 
 ## LeaRning is Social
 
@@ -107,6 +97,8 @@ Our goal is to be better programmers each day, not to be the perfect programmer.
 I know that everyone is busy, and we'll do our best to accomodate everyone's schedule. 
 
 Classes will be recorded, but please do not use this as an excuse to miss class. Again, those who are curious and ask questions will learn quite a bit. 
+<<<<<<< HEAD:00-course-info.Rmd
+=======
 
 ## Class Schedule
 
@@ -156,3 +148,4 @@ The Posit Cloud workspace is for your learning. Please do not put any patient or
 ## Offerings
 
 This course is taught on a regular basis at [Fred Hutch Cancer Center](https://www.fredhutch.org/) through the [Data Science Lab](https://hutchdatascience.org/). Announcements of course offering can be found [here](https://hutchdatascience.org/training/). If you wish to follow the course content asynchronously, you may access the course content on this website and [exercises and solutions on Posit Cloud](https://posit.cloud/content/8245357). The Posit Cloud compute space can be copied to your own workspace for personal use, and you can get started via this [introduction](https://hutchdatascience.org/Intro_to_R/intro-to-computing.html#posit-cloud-setup). Or, you can access the [exercises and solutions on GitHub](https://github.com/fhdsl/Intro_to_R_Exercises).
+>>>>>>> 878bc15096e4983606198ef00919387d97c9021a:docs/index.md
diff --git a/...e_files/figure-html/unnamed-chunk-2-1.png → ...e_files/figure-html/unnamed-chunk-2-1.png b/...e_files/figure-html/unnamed-chunk-2-1.png → ...e_files/figure-html/unnamed-chunk-2-1.png
diff --git a/...e_files/figure-html/unnamed-chunk-3-1.png → ...e_files/figure-html/unnamed-chunk-3-1.png b/...e_files/figure-html/unnamed-chunk-3-1.png → ...e_files/figure-html/unnamed-chunk-3-1.png
diff --git a/Intro_to_R.Rproj b/Intro_to_R.Rproj
@@ -0,0 +1,15 @@
+Version: 1.0
+
+RestoreWorkspace: Default
+SaveWorkspace: Default
+AlwaysSaveHistory: Default
+
+EnableCodeIndexing: Yes
+UseSpacesForTab: Yes
+NumSpacesForTab: 2
+Encoding: UTF-8
+
+RnwWeave: knitr
+LaTeX: pdfLaTeX
+
+BuildType: Website
diff --git a/Introduction to R.rds b/Introduction to R.rds
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-10-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-10-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-11-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-11-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-12-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-12-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-13-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-13-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-14-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-14-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-3-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-3-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-4-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-4-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-5-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-5-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-6-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-6-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-7-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-7-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-8-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-8-1.png
diff --git a/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-9-1.png b/_bookdown_files/05-data-visualization_files/figure-html/unnamed-chunk-9-1.png
diff --git a/_extensions/r-wasm/drop/_extension.yml b/_extensions/r-wasm/drop/_extension.yml
@@ -0,0 +1,20 @@
+title: Quarto Drop
+author: George Stagg
+version: 0.1.0-dev
+quarto-required: ">=1.3.0"
+contributes:
+  revealjs-plugins:
+    - name: RevealDrop
+      script:
+        - drop-runtime.js
+      stylesheet:
+        - drop-runtime.css
+      config:
+        drop:
+          button: true
+          shortcut: "`"
+          engine: webr
+          webr:
+            packages: []
+          pyodide:
+            packages: []
diff --git a/_extensions/r-wasm/drop/drop-runtime.css b/_extensions/r-wasm/drop/drop-runtime.css
diff --git a/_extensions/r-wasm/drop/drop-runtime.js b/_extensions/r-wasm/drop/drop-runtime.js
diff --git a/docs/01-intro-to-computing-exercises.md b/docs/01-intro-to-computing-exercises.md