OLC Webportal V2

A portal to commonly used CFIA-OLC genomics tools.

Requirements

WIP

Installation

WIP

Usage

WIP

Developer Notes

• Registering model changes

docker-compose -f dev.yml run django python manage.py makemigrations

docker-compose -f dev.yml run django python manage.py migrate

• Running background tasks

docker-compose -f dev.yml run django python manage.py process_tasks

Deployment

• clone repo, make sure you have docker images loaded from NAS (TODO: put on docker hub so can be pulled form anywhere)
• update ALLOWED_HOSTS in prod.yml to whatever your domain/IP address is.
• Make a directory in project root called postgres-data
• docker-compose build
• docker-compose up
• Things won't work quite yet. Attach into the web container: docker exec -it olcwebportalv2_web_1 /bin/bash and then make and run migrations python3 manage.py makemigrations and then python3 manage.py migrate. Finally, get background tasks running - python3 manage.py process_tasks

Running Tests

Follow the instructions in the deployment section. Then, attach into the web container:

docker exec -it olcwebportalv2_web_1 /bin/bash.

From inside the container type:

python3 manage.py test new_multisample