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[#12] Extend mapping to spatial coverage #18

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[#12] Extend mapping to spatial coverage #18

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4f6bf23
Add mapping of locality, coords, altitude, areas.
Jul 18, 2024
b0d4e1b
[#12] Added spatial datum.
Jul 18, 2024
656f34f
[#12] Add doublet check for locality & coordinates
Jul 18, 2024
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90 changes: 84 additions & 6 deletions transformations/abcd2bioschemas/abcd2bioschemas-xml.xslt
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Original file line number Diff line number Diff line change
Expand Up @@ -134,13 +134,91 @@ exclude-result-prefixes="xsl md panxslt set">
</usageInfo>
</xsl:for-each>

<xsl:for-each select="$country[not(.=preceding::*)]">
<spatialCoverage type="Country">
<name><xsl:value-of select="."/></name>
<identifier><xsl:value-of select="../abcd:ISO3166Code"/></identifier>
</spatialCoverage>
<xsl:for-each select="/abcd:DataSets/abcd:DataSet/abcd:Units/abcd:Unit">
<xsl:variable name="unit_locality" select="./abcd:Gathering/abcd:LocalityText"></xsl:variable>
<xsl:variable name="unit_coordinates" select="./abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong"></xsl:variable>
<xsl:variable name="unit_latitude" select="./abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong/abcd:LatitudeDecimal"></xsl:variable>
<xsl:variable name="unit_longitude" select="./abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong/abcd:LongitudeDecimal"></xsl:variable>
<xsl:variable name="unit_spatial_datum" select="./abcd:Gathering/abcd:SiteCoordinateSets/abcd:SiteCoordinates/abcd:CoordinatesLatLong/abcd:SpatialDatum"></xsl:variable>
<xsl:variable name="unit_country" select="./abcd:Gathering/abcd:Country/abcd:Name"></xsl:variable>
<xsl:variable name="unit_named_areas" select="./abcd:Gathering/abcd:NamedAreas/abcd:NamedArea"></xsl:variable>

<xsl:for-each select="$unit_country[not(.=preceding::*)]">
<spatialCoverage type="Country">
<name><xsl:value-of select="."/></name>
<identifier><xsl:value-of select="../abcd:ISO3166Code"/></identifier>
</spatialCoverage>
</xsl:for-each>

<xsl:for-each select="$unit_locality">
<xsl:choose>
<xsl:variable name="preceding_latitude" select="preceding::*[self::abcd:CoordinatesLatLong][1]/abcd:LatitudeDecimal"></xsl:variable>
<xsl:variable name="preceding_longitude" select="preceding::*[self::abcd:CoordinatesLatLong][1]/abcd:LongitudeDecimal"></xsl:variable>
<xsl:when test="not(.=preceding::*)">
<spatialCoverage type="Place">
<name><xsl:value-of select="."/></name>
<description><xsl:value-of select="."/></description>
<xsl:if test="$unit_coordinates">
<geo type="GeoCoordinates">
<xsl:if test="$unit_latitude">
<latitude xsi:type="xs:double"><xsl:value-of select="$unit_latitude"/></latitude>
</xsl:if>
<xsl:if test="$unit_longitude">
<longitude xsi:type="xs:double"><xsl:value-of select="$unit_longitude"/></longitude>
</xsl:if>
<xsl:if test="$unit_spatial_datum">
<additionalType><xsl:value-of select="$unit_spatial_datum"/></additionalType>
</xsl:if>
</geo>
</xsl:if>
<xsl:if test="$unit_named_areas">
<xsl:for-each select="$unit_named_areas">
<containedInPlace type="Place">
<name><xsl:value-of select="."/></name>
<xsl:if test="./abcd:AreaClass">
<additionalType><xsl:value-of select="./abcd:AreaClass"/></additionalType>
</xsl:if>
</containedInPlace>
</xsl:for-each>
</xsl:if>
</spatialCoverage>
</xsl:when>
<xsl:otherwise>
<!-- TODO: Part below can be removed if its if-clause can be combined with the first one -->
<xsl:if test="not($preceding_latitude = $unit_latitude and $preceding_longitude = $unit_longitude)">
<spatialCoverage type="Place">
<name><xsl:value-of select="."/></name>
<description><xsl:value-of select="."/></description>
<xsl:if test="$unit_coordinates">
<geo type="GeoCoordinates">
<xsl:if test="$unit_latitude">
<latitude xsi:type="xs:double"><xsl:value-of select="$unit_latitude"/></latitude>
</xsl:if>
<xsl:if test="$unit_longitude">
<longitude xsi:type="xs:double"><xsl:value-of select="$unit_longitude"/></longitude>
</xsl:if>
<xsl:if test="$unit_spatial_datum">
<additionalType><xsl:value-of select="$unit_spatial_datum"/></additionalType>
</xsl:if>
</geo>
</xsl:if>
<xsl:if test="$unit_named_areas">
<xsl:for-each select="$unit_named_areas">
<containedInPlace type="Place">
<name><xsl:value-of select="."/></name>
<xsl:if test="./abcd:AreaClass">
<additionalType><xsl:value-of select="./abcd:AreaClass"/></additionalType>
</xsl:if>
</containedInPlace>
</xsl:for-each>
</xsl:if>
</spatialCoverage>
</xsl:if>
</xsl:otherwise>
</xsl:choose>
</xsl:for-each>
</xsl:for-each>

<!-- get bounding box coordinates or coordinate pair, if there is only one -->
<xsl:if test="$coordinates/abcd:LatitudeDecimal and $coordinates/abcd:LongitudeDecimal">
<spatialCoverage type="Place">
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