fuNEGF

Solve the Non-Equillibrium Green's Functions (NEGF) transport on examples for educational purposes. Limited to a 1D linear chain for now. See the documentation.

pip install fuNEGF

If you find this package useful, please cite L. Vojáček. Multiscale modeling of spin-orbitronic phenomena at metal, oxide, and 2D material interfaces for spintronic devices. PhD thesis (2024).

Package structure

• the LinearChain class including the NEGF routines resides in src/fuNEGF/models.py
• a Jupyter notebook examples/one-dimensional_channel.ipynb contains the linear chain case study with the underlying physics explained
• a Jupyter notebok examples/time_complexity.ipynb contains a time complexity study of constructing the model $\mathcal{O}(N)$ and calculating the transmission coefficient $\mathcal{O}(N^2)$

Example

A linear chain with a single or multiple on-site potential impurities will present a chemical potential (occupation) drop, which may not be apparent unless a phase relaxation is included, as shown below. An additional momentum relaxation will cause a non-zero chemical potential slope in between the impurity regions. The complete description and calculation are provided in the examples/one-dimensional_channel.ipynb notebook.

Features

• automatically-generated documentation online
• object-oriented
• PEP8-compliant

The Theory In A Nutshell

NEGF

The retarded Green's function

$$ \mathbf{G}^{\mathrm{R}}=[E \mathbf{I}-\mathbf{H}-\mathbf{\Sigma}]^{-1} $$

is a function of energy $E$ multiplied by the identity matrix $\mathbf{I}$. The Hamiltonian $\mathbf{H}$ and self-energy $\mathbf{\Sigma}$ matrices are to be defined by the physical model.

Along with the advanced Green's function

$$ \mathbf{G}^{\mathrm{A}} = \left[ \mathbf{G}^{\mathrm{R}} \right]^\dagger $$

they provide the spectral function

$$ \mathbf{A}=i\left[\mathbf{G}^{\mathrm{R}}-\mathbf{G}^{\mathrm{A}}\right] $$

and are used to solve for the "electron occupation" Green's function

$$ \mathbf{G}^{\mathrm{n}}=\mathbf{G}^{\mathrm{R}} \mathbf{\Sigma}^{\mathrm{in}} \mathbf{G}^{\mathrm{A}} $$

which gives the density matrix

$$ \hat{\rho} = \mathbf{G}^{\mathrm{n}} / 2\pi . $$

The in-scattering term $\mathbf{\Sigma}^{\mathrm{in}}$ is also defined by the physical model.

Both, the self-energy $\mathbf{\Sigma}$ and the in-scattering term $\mathbf{\Sigma}^{\mathrm{in}}$ are sums of the left contact $\mathbf{\Sigma}_1$, right contact $\mathbf{\Sigma}_2$ and an intrinsic term $\mathbf{\Sigma}_0$, hence

$$ \begin{align} \mathbf{\Sigma} &= \mathbf{\Sigma}_1 + \mathbf{\Sigma}_2 + \mathbf{\Sigma}_0 , \\ \mathbf{\Sigma}^{\mathrm{in}} &= \mathbf{\Sigma}^{\mathrm{in}}_1 + \mathbf{\Sigma}^{\mathrm{in}}_2 + \mathbf{\Sigma}^{\mathrm{in}}_0 . \end{align} $$

NOTE: We use the (physically expressive) notation of S. Datta, where the self-energies and Green's functions in relation to the standard notation (on the right) are defined as

$$ \begin{align} \mathbf{\Sigma} &\equiv \mathbf{\Sigma}^\mathrm{R} , \\ \mathbf{G}^\mathrm{n} &\equiv -i \mathbf{G}^< , \\ \mathbf{\Sigma}^\mathrm{in} &\equiv -i \mathbf{\Sigma}^< . \end{align} $$

Linear Chain Model

For the LinearChain model, the Hamiltonian

$$ H_{ij} = \begin{cases} \epsilon_0, & \text { if } i=j \\ t, & \text{ if } i \neq j \end{cases} $$

Impurity potential $U$ can be added to the on-site energy as

$$ \mathbf{H}=\left[ \begin{array}{ccccc} \ddots & \vdots & \vdots & \vdots & \ddots \\ \cdots & \varepsilon & t & 0 & \cdots \\ \cdots & t & \varepsilon+U & t & \cdots \\ \cdots & 0 & t & \varepsilon & \cdots \\ \ddots & \vdots & \vdots & \vdots & \ddots \end{array} \right] . $$

The self-energies

$$ \mathbf{\Sigma}_1=\left[\begin{array}{ccccc} \mathrm{te}^{i k a} & 0 & 0 & \cdots & 0 \\ 0 & 0 & 0 & \cdots & 0 \\ 0 & 0 & 0 & \cdots & 0 \\ \vdots & \vdots & \vdots & \ddots & \vdots \\ 0 & 0 & 0 & \cdots & 0 \end{array}\right], \quad \mathbf{\Sigma}_2=\left[\begin{array}{ccccc} 0 & \cdots & 0 & 0 & 0 \\ \vdots & \ddots & \vdots & \vdots & \vdots \\ 0 & \cdots & 0 & 0 & 0 \\ 0 & \cdots & 0 & 0 & 0 \\ 0 & \cdots & 0 & 0 & \mathrm{te}^{i k a} \end{array}\right] , $$

with the broadening functions $\mathbf{\Gamma} \equiv i\left[ \mathbf{\Sigma} - \mathbf{\Sigma}^\dagger\right] $

$$ \mathbf{\Gamma}_1=\frac{\hbar v}{a}\left[\begin{array}{ccccc} 1 & 0 & 0 & \cdots & 0 \\ 0 & 0 & 0 & \cdots & 0 \\ 0 & 0 & 0 & \cdots & 0 \\ \vdots & \vdots & \vdots & \ddots & \vdots \\ 0 & 0 & 0 & \cdots & 0 \end{array}\right], \quad \mathbf{\Gamma}_2=\frac{\hbar v}{a}\left[\begin{array}{ccccc} 0 & \cdots & 0 & 0 & 0 \\ \vdots & \ddots & \vdots & \vdots & \vdots \\ 0 & \cdots & 0 & 0 & 0 \\ 0 & \cdots & 0 & 0 & 0 \\ 0 & \cdots & 0 & 0 & 1 \end{array}\right] , $$

where $v=\mathrm{d} E /(\hbar \mathrm{d} k) = -2 a t / \hbar \sin (k a)$ so that $\frac{\hbar v}{a} = -2 t / \sin (k a)$.

The in-scattering terms

$$ \mathbf{\Sigma}^\mathrm{in}_i = \mathbf{\Gamma}_i \cdot f_i(E) , $$

where $f_i(E)$ is the Fermi-Dirac distribution function for contact $i \in \set{1, 2}$.

The self-energies describing the phase and phase-momentum relaxation are defined in terms of the Green's functions themselves. Their strength is defined via the (scalar) coefficients $D_0^\text{phase}$ and $D_0^\text{phase-momentum}$, creating a "mask" matrix

$$ \mathbf{D} = D_0^\text{phase} \left[\begin{array}{ccccc} 1 & 1 & 1 & \cdots & 1 \\ 1 & 1 & 1 & \cdots & 1 \\ 1 & 1 & 1 & \cdots & 1 \\ \vdots & \vdots & \vdots & \ddots & \vdots \\ 1 & 1 & 1 & \cdots & 1 \end{array}\right] + D_0^\text{phase-momentum} \left[\begin{array}{ccccc} 1 & 0 & 0 & \cdots & 0 \\ 0 & 1 & 0 & \cdots & 0 \\ 0 & 0 & 1 & \cdots & 0 \\ \vdots & \vdots & \vdots & \ddots & \vdots \\ 0 & 0 & 0 & \cdots & 1 \end{array}\right] , $$

which is used for an element-wise multiplication $\odot$ of the Green's function matrices

$$ \begin{align} \mathbf{\Sigma}_0 &= \mathbf{D} \odot \mathbf{G}^\text{R}, \\ \mathbf{\Sigma}^\text{in}_0 &= \mathbf{D} \odot \mathbf{G}^\text{n} . \end{align} $$

Since the Green's functions enter the definition of the self-energy, a self-consistent loop is performed, where $\mathbf{G}^\text{R}$ and $\mathbf{G}^\text{n}$ are initially set as zero matrices and iteratively updated, along with $\mathbf{\Sigma}_0$ and $\mathbf{\Sigma}^\text{in}_0$. About 70 iteration steps are usually enough to reach a convergence.