v0.3.0

Main updates v0.2.0 --> v0.3.0: Muon support for AnnData struct and I/O

• added Muon.jl dependency and switched to the Muon AnnData struct
• adapted all data loading and preprocessing functions to the Muon AnnData struct
• many bugfixes in preprocessing functions for subsetting, filtering, HVG selection, transformations
• extension of preprocessing functionality
• comprehensive test cases

v0.2.0

Main updates v0.1.0 --> v0.2.0

• refactoring of AnnData struct to more closely resemble the Python anndata objects
• basic AnnData handling, e.g., subsetting and copying
• basic I/O for .h5 / .h5ad files (still to be extended+generalized)
• refactoring and addition of many pre-processing functions similar to scanpy (e.g., filtering cells/genes, transformations, normalization, dimension reduction)
• implementation of library size encoding
• support for Gaussian, Bernoulli and Poisson likelihood
• more functions for working with the latent representation: plotting, sampling from decoder
• automatic building of docs based on GitHub Actions workflow, hosted on GitHub Pages

v0.1.0

First complete implementation of basic functionality. Docs hosted on Github Pages, but still based on local build.