sometimes projects are omitted from a flow cell (budgetary regions). …

…Escape Nonetypes in the mqc building.
maxplanck-ie · Mar 6, 2023 · 3a87b78 · 3a87b78
1 parent 83479fc
commit 3a87b78
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Showing 2 changed files with 10 additions and 4 deletions.
diff --git a/ChangeLog b/ChangeLog
@@ -1,6 +1,12 @@
 CHANGES
 =======
 
+* escape nones in libtypes
+* include non-ommitted empty samples in kraken for email
+* flake fix/precommit version boost
+* Finalize omit samples in email. Only display project exitstats of that specific lane
+* flake fix/precommit version boost
+* Finalize omit samples in email. Only display project exitstats of that specific lane
 * colliding samples that are removed from a demuxsheet cause issues in postmux stage. This commit escapes those
 * flake8 demux
 * simplify the substr check

diff --git a/src/dissectBCL/fakeNews.py b/src/dissectBCL/fakeNews.py
@@ -290,19 +290,19 @@ def multiQC_yaml(config, flowcell, ssDic, project, laneFolder):
     # config yaml
     # libraryTypes
     libTypes = ', '.join(list(
-        ssdf['Library_Type'].unique().fillna('None')
+        ssdf['Library_Type'].fillna('None').unique()
     ))
     # indexTypes
     ixTypes = ', '.join(list(
-        ssdf["indexType"].unique().fillna('None')
+        ssdf["indexType"].fillna('None').unique()
     ))
     # Protocols
     protTypes = ', '.join(list(
-        ssdf["Description"].unique().fillna('None')
+        ssdf["Description"].fillna('None').unique()
     ))
     # Organisms
     orgs = ', '.join(list(
-        ssdf["Organism"].unique().fillna('None')
+        ssdf["Organism"].fillna('None').unique()
     ))
     # Resequencing runs are screwed up (e.g. don't contain the samples)
     # switch total requested to NA