Merge pull request #1054 from maxplanck-ie/KS #1436

	name: osx

	on: [pull_request, push]

	defaults:
	run:
	shell: bash -l {0}

	jobs:
	createEnvs_OSX:
	strategy:
	fail-fast: false
	matrix:
	envs: [
	'CONDA_SHARED_ENV',
	'CONDA_CREATE_INDEX_ENV',
	'CONDA_RNASEQ_ENV',
	'CONDA_RMATS_ENV',
	'CONDA_scRNASEQ_ENV',
	'CONDA_seurat3_ENV',
	'CONDA_loompy_ENV',
	'CONDA_alevinqc_ENV',
	'CONDA_eisaR_ENV',
	'CONDA_DNA_MAPPING_ENV',
	'CONDA_CHIPSEQ_ENV',
	'CONDA_ATAC_ENV',
	'CONDA_HIC_ENV',
	'CONDA_WGBS_ENV',
	'CONDA_DSS_ENV',
	'CONDA_RMD_ENV',
	'CONDA_PREPROCESSING_ENV',
	'CONDA_NONCODING_RNASEQ_ENV',
	'CONDA_SAMBAMBA_ENV',
	'CONDA_pysam_ENV'
	]
	runs-on: macos-latest
	steps:
	- uses: actions/checkout@v4
	- uses: conda-incubator/setup-miniconda@v3
	with:
	environment-file: .github/conda_ci.yml
	activate-environment: conda_ci
	condarc-file: .github/condarc.yml
	- name: install snakePipes_OSX
	run: \|
	pip install .
	- name: createEnvsOSX
	run: \|
	conda config --add subdirs osx-64
	snakePipes createEnvs --only ${{matrix.envs}}

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