fix 1023

maxplanck-ie · Sep 5, 2024 · 084c3e6 · 084c3e6
1 parent 940287a
commit 084c3e6
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/snakePipes/shared/rules/umi_tools.snakefile b/snakePipes/shared/rules/umi_tools.snakefile
@@ -86,7 +86,7 @@ else:
     elif not (aligner=="bwameth" or aligner=="bwameth2") :
         rule filter_reads:
             input:
-                bamfile = aligner+"/{sample}.bam"
+                bamfile = "filtered_bam/{sample}.filtered.tmp.bam"
             output:
                 bamfile = "filtered_bam/{sample}.filtered.bam"
             shell: """