Merge pull request #9 from milzj/nominal

Nominal

.github/workflows/test.yml

@@ -3,7 +3,7 @@ name: Test
 on:
   push:
     branches:
-      - "*"
+      - main
   pull_request:
     branchess:
       - "*"

.gitignore

@@ -1,7 +1,10 @@
 # For projects using Nanoc (http://nanoc.ws/)
+*.swp
+*.sav
 
 # Default location for output (needs to match output_dir's value found in nanoc.yaml)
 output/
+build?
 
 # Temporary file directory
 tmp/nanoc/

environment.yml

@@ -6,9 +6,9 @@ dependencies:
   - python=3.8.11
   - pip=20.2.4
   - fenics=2019.1.0
-  - scipy=1.7.0
+  - scipy=1.10.0
   - numpy=1.21.1
   - matplotlib=3.4.2
   - dolfin-adjoint=2019.1.0
   - pip:
-      - git+https://github.com/milzj/FW4PDE.git@pip-tidal
+      - git+https://github.com/milzj/FW4PDE.git@devel

lit/.gitignore

@@ -0,0 +1,3 @@
+build/
+*.bak
+*.sav

lit/lit_tidalfarm.bib

@@ -0,0 +1,113 @@
+@Article{Funke2016,
+  author   = {S. W. Funke and S. C. Kramer and M. D. Piggott},
+  title    = {Design optimisation and resource assessment for tidal-stream renewable energy farms using a new continuous turbine approach},
+  journal  = {Renew. Energ.},
+  year     = {2016},
+  volume   = {99},
+  pages    = {1046-1061},
+  issn     = {0960-1481},
+  doi      = {10.1016/j.renene.2016.07.039},
+  keywords = {Marine renewable energy, Tidal stream turbines, Optimisation, Shallow water equations, Resource assessment, Pentland Firth},
+}
+
+@TechReport{Nordaas2016,
+  author = {Magne Nordaas and Simon W. Funke},
+  title  = {The {M}oola optimisation package},
+  year   = {2016},
+  url    = {https://github.com/funsim/moola},
+}
+
+@Article{Alnaes2015,
+  author    = {Aln{\ae}s, M. S. and Blechta, J and Hake, J. and Johansson, A and Kehlet, B and Logg, A. and Richardson, C and Ring, J and Rognes, M. E and Wells, G. N.},
+  journal   = {Arch. Numer. Software},
+  title     = {The {FE}ni{CS} {P}roject {V}ersion \textnormal{1.5}},
+  year      = {2015},
+  number    = {100},
+  pages     = {9--23},
+  volume    = {3},
+  doi       = {10.11588/ans.2015.100.20553},
+  groups    = {FEniCS/UFL/Dolfin},
+  owner     = {jomi},
+  timestamp = {2019.07.09},
+}
+
+@InCollection{Piggott2022,
+  author    = {Matthew D. Piggott and Stephan C. Kramer and Simon W. Funke and David M. Culley and Athanasios Angeloudis},
+  booktitle = {Comprehensive Renewable Energy},
+  publisher = {Elsevier},
+  title     = {8.10 - Optimization of Marine Renewable Energy Systems},
+  year      = {2022},
+  address   = {Oxford},
+  edition   = {2nd},
+  editor    = {Trevor M. Letcher},
+  pages     = {176--220},
+  volume    = {8},
+  doi       = {10.1016/b978-0-12-819727-1.00179-5},
+}
+
+@Book{Schwedes2017,
+  title     = {{M}esh {D}ependence in {PDE}-{C}onstrained {O}ptimisation},
+  publisher = {Springer},
+  year      = {2017},
+  author    = {Schwedes, Tobias and Ham, David A. and Funke, Simon W. and Piggott, Matthew D.},
+  series    = {SpringerBriefs Math. Planet Earth},
+  address   = {Cham},
+  doi       = {10.1007/978-3-319-59483-5},
+  groups    = {PDE},
+  owner     = {jomi},
+  timestamp = {2019.03.05},
+}
+
+@Article{Funke2014,
+  author    = {S. W. Funke and P. E. Farrell and M. D. Piggott},
+  title     = {Tidal turbine array optimisation using the adjoint approach},
+  journal   = {Renewable Energy},
+  year      = {2014},
+  volume    = {63},
+  pages     = {658--673},
+  issn      = {0960-1481},
+  doi       = {10.1016/j.renene.2013.09.031},
+  groups    = {PDESOApplications},
+  owner     = {jomi},
+  timestamp = {2020.12.18},
+}
+
+@Article{Mitusch2019,
+  author    = {Sebastian K. Mitusch and Simon W. Funke and J{\o}rgen S. Dokken},
+  title     = {dolfin-adjoint \normalfont{2018.1}: automated adjoints for {FEniCS} and {F}iredrake},
+  journal   = {J. Open Source Softw.},
+  year      = {2019},
+  volume    = {4},
+  number    = {38},
+  pages     = {1292},
+  doi       = {10.21105/joss.01292},
+  publisher = {The Open Journal},
+}
+
+@Software{Schwedes2016,
+  author    = {Schwedes, Tobias and Ham, David and Funke, Simon Wolfgang},
+  doi       = {10.5281/zenodo.224251},
+  publisher = {Zenodo},
+  title     = {Code for simulations in Chapter 3 of ResearchBrief},
+  year      = {2016},
+}
+
+@Article{Kreitmair2019,
+  author  = {Kreitmair, M J and Draper, S and Borthwick, A G L and van den Bremer, T},
+  title   = {The effect of uncertain bottom friction on estimates of tidal current power},
+  journal = {R. Soc. open sci. 6: 180941},
+  year    = {2019},
+  doi     = {10.1098/rsos.180941},
+}
+
+@Book{Kreitmair2021,
+  author    = {Monika Johanna Kreitmair},
+  publisher = {Springer},
+  title     = {The {E}ffect of {U}ncertainty on {T}idal {S}tream {E}nergy {R}esource {E}stimates},
+  year      = {2021},
+  address   = {Cham},
+  series    = {Springer Theses},
+  doi       = {10.1007/978-3-030-57658-5},
+}
+
+@Comment{jabref-meta: databaseType:bibtex;}

lit/lit_tidalfarm.md

@@ -0,0 +1,89 @@
+<div id="refs" class="references hanging-indent">
+
+<div id="ref-Alnaes2015">
+
+Alnæs, M. S., J Blechta, J. Hake, A Johansson, B Kehlet, A. Logg, C
+Richardson, J Ring, M. E Rognes, and G. N. Wells. 2015. “The FEniCS
+Project Version 1.5.” *Arch. Numer. Software* 3 (100): 9–23.
+<https://doi.org/10.11588/ans.2015.100.20553>.
+
+</div>
+
+<div id="ref-Funke2014">
+
+Funke, S. W., P. E. Farrell, and M. D. Piggott. 2014. “Tidal Turbine
+Array Optimisation Using the Adjoint Approach.” *Renewable Energy* 63:
+658–73. <https://doi.org/10.1016/j.renene.2013.09.031>.
+
+</div>
+
+<div id="ref-Funke2016">
+
+Funke, S. W., S. C. Kramer, and M. D. Piggott. 2016. “Design
+Optimisation and Resource Assessment for Tidal-Stream Renewable Energy
+Farms Using a New Continuous Turbine Approach.” *Renew. Energ.* 99:
+1046–61. <https://doi.org/10.1016/j.renene.2016.07.039>.
+
+</div>
+
+<div id="ref-Kreitmair2019">
+
+Kreitmair, M J, S Draper, A G L Borthwick, and T van den Bremer. 2019.
+“The Effect of Uncertain Bottom Friction on Estimates of Tidal Current
+Power.” *R. Soc. Open Sci. 6: 180941*.
+<https://doi.org/10.1098/rsos.180941>.
+
+</div>
+
+<div id="ref-Kreitmair2021">
+
+Kreitmair, Monika Johanna. 2021. *The Effect of Uncertainty on Tidal
+Stream Energy Resource Estimates*. Springer Theses. Cham: Springer.
+<https://doi.org/10.1007/978-3-030-57658-5>.
+
+</div>
+
+<div id="ref-Mitusch2019">
+
+Mitusch, Sebastian K., Simon W. Funke, and Jørgen S. Dokken. 2019.
+“Dolfin-Adjoint 2018.1: Automated Adjoints for FEniCS and Firedrake.”
+*J. Open Source Softw.* 4 (38): 1292.
+<https://doi.org/10.21105/joss.01292>.
+
+</div>
+
+<div id="ref-Nordaas2016">
+
+Nordaas, Magne, and Simon W. Funke. 2016. “The Moola Optimisation
+Package.” <https://github.com/funsim/moola>.
+
+</div>
+
+<div id="ref-Piggott2022">
+
+Piggott, Matthew D., Stephan C. Kramer, Simon W. Funke, David M. Culley,
+and Athanasios Angeloudis. 2022. “8.10 - Optimization of Marine
+Renewable Energy Systems.” In *Comprehensive Renewable Energy*, edited
+by Trevor M. Letcher, 2nd ed., 8:176–220. Oxford: Elsevier.
+<https://doi.org/10.1016/b978-0-12-819727-1.00179-5>.
+
+</div>
+
+<div id="ref-Schwedes2017">
+
+Schwedes, Tobias, David A. Ham, Simon W. Funke, and Matthew D. Piggott.
+2017. *Mesh Dependence in PDE-Constrained Optimisation*. SpringerBriefs
+Math. Planet Earth. Cham: Springer.
+<https://doi.org/10.1007/978-3-319-59483-5>.
+
+</div>
+
+<div id="ref-Schwedes2016">
+
+Schwedes, Tobias, David Ham, and Simon Wolfgang Funke. 2016. *Code for
+Simulations in Chapter 3 of Researchbrief*. Zenodo.
+<https://doi.org/10.5281/zenodo.224251>.
+
+</div>
+
+</div>

lit/lit_tidalfarm.sh

@@ -0,0 +1 @@
+pandoc --filter pandoc-citeproc --bibliography=lit_tidalfarm.bib  -f latex -t gfm -o lit_tidalfarm.md lit_tidalfarm.tex

lit/lit_tidalfarm.tex

@@ -0,0 +1,12 @@
+\documentclass{article}
+
+\usepackage{hyperref}
+
+\begin{document}
+
+	\nocite{*}
+	\bibliographystyle{plainurl}
+	\bibliography{lit_tidalfarm}
+
+
+\end{document}

lit/tex2md.sh

@@ -0,0 +1 @@
+pandoc --filter pandoc-citeproc --bibliography=lit_tidalfarm.bib  -f latex -t gfm -o lit_tidalfarm.md lit_tidalfarm.tex

tests/conftest.py → test/conftest.py

@@ -2,7 +2,7 @@
 import sys
 
 here = Path(__file__).parent
-sys.path.insert(0, str(here.parent) + "/mcrnnoc")
+sys.path.insert(0, str(here.parent) + "/tidalfarm")
 
 import pytest
 import numpy as np

test/test_random_problem/README.md

@@ -0,0 +1 @@
+Source: https://github.com/milzj/SAA4PDE/tree/semilinear_complexity/tests/random_problem

test/test_random_problem/random_optimal_poisson/.gitignore

@@ -0,0 +1 @@
+riskneutral_analyticsolution.pdf