Quick bug fix

ncsa · May 29, 2024 · d650d2b · d650d2b
1 parent 866fbd7
commit d650d2b
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/neat/read_simulator/utils/output_file_writer.py b/neat/read_simulator/utils/output_file_writer.py
@@ -342,7 +342,7 @@ def write_bam_record(self, read: Read, contig_id: int, bam_handle: bgzf.BgzfWrit
         template_length = read.get_tlen()
         alt_sequence = read.read_sequence
 
-        cigar, n_corr, crap = read.make_cigar()
+        cigar = read.make_cigar()
 
         cig_letters = re.split(r"\d+", cigar)[1:]
         cig_numbers = [int(n) for n in re.findall(r"\d+", cigar)]
@@ -408,4 +408,4 @@ def write_bam_record(self, read: Read, contig_id: int, bam_handle: bgzf.BgzfWrit
                           encoded_cig +
                           encoded_seq +
                           encoded_qual.encode('utf-8')))
-        return n_corr, crap
+