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Bump hsqldb from 2.3.2 to 2.7.1 #13

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@dependabot dependabot bot commented on behalf of github Dec 5, 2022

Bumps hsqldb from 2.3.2 to 2.7.1.

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Bumps hsqldb from 2.3.2 to 2.7.1.

---
updated-dependencies:
- dependency-name: org.hsqldb:hsqldb
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
@dependabot dependabot bot added the dependencies Pull requests that update a dependency file label Dec 5, 2022
@ylyangtw
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ylyangtw commented Sep 4, 2024

I am testing this PR and have 2 questions:

  1. For version 2.7.1, it requires java 11 which many other libraries need to be upgraded altogether. Maybe this can be a future plan?
  2. Version 2.5.2 should be compatible with java 8, but many tables are not found. How to add those tables properly? Here are the logs:
2024-09-04 10:53:14 2024-09-04 02:53:14.032:INFO::main: Logging initialized @48ms
2024-09-04 10:53:14 2024-09-04 02:53:14.034:INFO:oejr.Runner:main: Runner
2024-09-04 10:53:14 2024-09-04 02:53:14.084:WARN:oejsh.ContextHandler:main: o.e.j.w.WebAppContext@4d591d15{/,null,null} contextPath ends with /
2024-09-04 10:53:14 2024-09-04 02:53:14.086:INFO:oejs.Server:main: jetty-9.2.2.v20140723
2024-09-04 10:53:15 02:53:15,588 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering provider instance for edu.illinois.ncsa.datawolf.service.AuthenticationInterceptor
2024-09-04 10:53:15 02:53:15,590 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering provider instance for com.fasterxml.jackson.jaxrs.json.JacksonJaxbJsonProvider
2024-09-04 10:53:15 02:53:15,591 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.file.service.FilesResource
2024-09-04 10:53:15 02:53:15,603 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.DatasetsResource
2024-09-04 10:53:15 02:53:15,606 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.ExecutionsResource
2024-09-04 10:53:15 02:53:15,608 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.ExecutorsResource
2024-09-04 10:53:15 02:53:15,609 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.LogFilesResource
2024-09-04 10:53:15 02:53:15,609 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.LoginResource
2024-09-04 10:53:15 02:53:15,611 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.PersonsResource
2024-09-04 10:53:15 02:53:15,612 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.WorkflowsResource
2024-09-04 10:53:15 02:53:15,614 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.WorkflowToolsResource
2024-09-04 10:53:15 02:53:15,615 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.BrownDogResource
2024-09-04 10:53:15 02:53:15,616 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.KistiHPCResource
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,674 [main]  INFO          org.hibernate.jpa.internal.util.LogHelper:  46 - HHH000204: Processing PersistenceUnitInfo [
2024-09-04 10:53:15     name: WolfPersistence
2024-09-04 10:53:15     ...]
2024-09-04 10:53:15 02:53:15,703 [main]  INFO                              org.hibernate.Version:  54 - HHH000412: Hibernate Core {4.3.5.Final}
2024-09-04 10:53:15 02:53:15,703 [main]  INFO                      org.hibernate.cfg.Environment: 239 - HHH000206: hibernate.properties not found
2024-09-04 10:53:15 02:53:15,704 [main]  INFO                      org.hibernate.cfg.Environment: 346 - HHH000021: Bytecode provider name : javassist
2024-09-04 10:53:15 02:53:15,790 [main]  INFO           org.hibernate.annotations.common.Version:  66 - HCANN000001: Hibernate Commons Annotations {4.0.4.Final}
2024-09-04 10:53:15 02:53:15,843 [main]  INFO c.connections.internal.ConnectionProviderInitiator: 190 - HHH000130: Instantiating explicit connection provider: com.zaxxer.hikari.hibernate.HikariConnectionProvider
2024-09-04 10:53:15 02:53:15,858 [main]  INFO                 com.zaxxer.hikari.HikariDataSource:  70 - HikariPool-1 - Started.
2024-09-04 10:53:16 02:53:16,012 [main]  INFO                    com.zaxxer.hikari.pool.PoolBase: 469 - HikariPool-1 - Driver does not support get/set network timeout for connections. (feature not supported)
2024-09-04 10:53:16 02:53:16,026 [main]  INFO                      org.hibernate.dialect.Dialect: 145 - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2024-09-04 10:53:16 02:53:16,117 [main]  INFO bernate.hql.internal.ast.ASTQueryTranslatorFactory:  47 - HHH000397: Using ASTQueryTranslatorFactory
2024-09-04 10:53:16 02:53:16,240 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 182 - HHH000228: Running hbm2ddl schema update
2024-09-04 10:53:16 02:53:16,241 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 193 - HHH000102: Fetching database metadata
2024-09-04 10:53:16 02:53:16,244 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 205 - HHH000396: Updating schema
2024-09-04 10:53:16 02:53:16,248 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,254 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,254 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,280 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,293 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 242 - HHH000232: Schema update complete
2024-09-04 10:53:16 2024-09-04 02:53:16.327:INFO:oejsh.ContextHandler:main: Started o.e.j.w.WebAppContext@4d591d15{/datawolf,file:/tmp/jetty-0.0.0.0-8888-datawolf-webapp-all-4.7.0-SNAPSHOT.war-_datawolf-any-3987590102281174189.dir/webapp/,AVAILABLE}{/home/datawolf/lib/datawolf-webapp-all-4.7.0-SNAPSHOT.war}
2024-09-04 10:53:16 2024-09-04 02:53:16.405:INFO:oejsh.ContextHandler:main: Started o.e.j.w.WebAppContext@7b1d7fff{/datawolf/editor,file:/tmp/jetty-0.0.0.0-8888-datawolf-editor-4.7.0-SNAPSHOT.war-_datawolf_editor-any-2035005524036321924.dir/webapp/,AVAILABLE}{/home/datawolf/lib/datawolf-editor-4.7.0-SNAPSHOT.war}
2024-09-04 10:53:16 2024-09-04 02:53:16.406:WARN:oejsh.RequestLogHandler:main: !RequestLog
2024-09-04 10:53:16 2024-09-04 02:53:16.443:INFO:oejs.ServerConnector:main: Started ServerConnector@33d53216{HTTP/1.1}{0.0.0.0:8888}
2024-09-04 10:53:16 2024-09-04 02:53:16.444:INFO:oejs.Server:main: Started @2476ms

@navarroc
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navarroc commented Sep 4, 2024

Please see my comment on the issue. There is an additional pom argument indicating jdk8 if you look at the link I put

@ylyangtw
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ylyangtw commented Sep 4, 2024

Please see my comment on the issue. There is an additional pom argument indicating jdk8 if you look at the link I put

Ah yes I forgot to mention this. I did try adding the jdk8 argument following the suggestion, but it failed at runtime...

2024-09-04 11:21:11 java.lang.UnsupportedClassVersionError: org/hsqldb/jdbc/JDBCDataSource has been compiled by a more recent version of the Java Runtime (class file version 55.0), this version of the Java Runtime only recognizes class file versions up to 52.0

@navarroc
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navarroc commented Sep 4, 2024

You'll have to search for all the pom files and add it to each block that has hsqldb. There are like 4 or 5 that import hsqldb.

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navarroc commented Sep 4, 2024

If you look at the error the 55 refers to Java 11 so that tells us that some references were missed.

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navarroc commented Sep 4, 2024

Sorry for the fragmented comments, since you were working on this I was answering from my phone trying to give some clues. I would create a new branch for the hsqldb change since we can't use this dependabot PR. We need to update the pom files to tell it to pull in the Java 8 version of the hsql library. If you do a search for hsql.version you should locate I think 5 pom.xml files that reference it. Wherever it pulls it in, you will need to update to tell it to use the jdk8 by adding the xml tag jdk8.

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navarroc commented Sep 4, 2024

I am testing this PR and have 2 questions:

  1. For version 2.7.1, it requires java 11 which many other libraries need to be upgraded altogether. Maybe this can be a future plan?
  2. Version 2.5.2 should be compatible with java 8, but many tables are not found. How to add those tables properly? Here are the logs:
2024-09-04 10:53:14 2024-09-04 02:53:14.032:INFO::main: Logging initialized @48ms
2024-09-04 10:53:14 2024-09-04 02:53:14.034:INFO:oejr.Runner:main: Runner
2024-09-04 10:53:14 2024-09-04 02:53:14.084:WARN:oejsh.ContextHandler:main: o.e.j.w.WebAppContext@4d591d15{/,null,null} contextPath ends with /
2024-09-04 10:53:14 2024-09-04 02:53:14.086:INFO:oejs.Server:main: jetty-9.2.2.v20140723
2024-09-04 10:53:15 02:53:15,588 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering provider instance for edu.illinois.ncsa.datawolf.service.AuthenticationInterceptor
2024-09-04 10:53:15 02:53:15,590 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering provider instance for com.fasterxml.jackson.jaxrs.json.JacksonJaxbJsonProvider
2024-09-04 10:53:15 02:53:15,591 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.file.service.FilesResource
2024-09-04 10:53:15 02:53:15,603 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.DatasetsResource
2024-09-04 10:53:15 02:53:15,606 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.ExecutionsResource
2024-09-04 10:53:15 02:53:15,608 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.ExecutorsResource
2024-09-04 10:53:15 02:53:15,609 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.LogFilesResource
2024-09-04 10:53:15 02:53:15,609 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.LoginResource
2024-09-04 10:53:15 02:53:15,611 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.PersonsResource
2024-09-04 10:53:15 02:53:15,612 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.WorkflowsResource
2024-09-04 10:53:15 02:53:15,614 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.WorkflowToolsResource
2024-09-04 10:53:15 02:53:15,615 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.BrownDogResource
2024-09-04 10:53:15 02:53:15,616 [main]  INFO   org.jboss.resteasy.plugins.guice.ModuleProcessor:  90 - registering factory for edu.illinois.ncsa.datawolf.service.KistiHPCResource
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,632 [main]  WARN             org.hibernate.ejb.HibernatePersistence:  58 - HHH015016: Encountered a deprecated javax.persistence.spi.PersistenceProvider [org.hibernate.ejb.HibernatePersistence]; use [org.hibernate.jpa.HibernatePersistenceProvider] instead.
2024-09-04 10:53:15 02:53:15,674 [main]  INFO          org.hibernate.jpa.internal.util.LogHelper:  46 - HHH000204: Processing PersistenceUnitInfo [
2024-09-04 10:53:15     name: WolfPersistence
2024-09-04 10:53:15     ...]
2024-09-04 10:53:15 02:53:15,703 [main]  INFO                              org.hibernate.Version:  54 - HHH000412: Hibernate Core {4.3.5.Final}
2024-09-04 10:53:15 02:53:15,703 [main]  INFO                      org.hibernate.cfg.Environment: 239 - HHH000206: hibernate.properties not found
2024-09-04 10:53:15 02:53:15,704 [main]  INFO                      org.hibernate.cfg.Environment: 346 - HHH000021: Bytecode provider name : javassist
2024-09-04 10:53:15 02:53:15,790 [main]  INFO           org.hibernate.annotations.common.Version:  66 - HCANN000001: Hibernate Commons Annotations {4.0.4.Final}
2024-09-04 10:53:15 02:53:15,843 [main]  INFO c.connections.internal.ConnectionProviderInitiator: 190 - HHH000130: Instantiating explicit connection provider: com.zaxxer.hikari.hibernate.HikariConnectionProvider
2024-09-04 10:53:15 02:53:15,858 [main]  INFO                 com.zaxxer.hikari.HikariDataSource:  70 - HikariPool-1 - Started.
2024-09-04 10:53:16 02:53:16,012 [main]  INFO                    com.zaxxer.hikari.pool.PoolBase: 469 - HikariPool-1 - Driver does not support get/set network timeout for connections. (feature not supported)
2024-09-04 10:53:16 02:53:16,026 [main]  INFO                      org.hibernate.dialect.Dialect: 145 - HHH000400: Using dialect: org.hibernate.dialect.HSQLDialect
2024-09-04 10:53:16 02:53:16,117 [main]  INFO bernate.hql.internal.ast.ASTQueryTranslatorFactory:  47 - HHH000397: Using ASTQueryTranslatorFactory
2024-09-04 10:53:16 02:53:16,240 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 182 - HHH000228: Running hbm2ddl schema update
2024-09-04 10:53:16 02:53:16,241 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 193 - HHH000102: Fetching database metadata
2024-09-04 10:53:16 02:53:16,244 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 205 - HHH000396: Updating schema
2024-09-04 10:53:16 02:53:16,248 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,249 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,251 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,252 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,253 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,254 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,254 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,255 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,256 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,257 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,258 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,259 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,260 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,261 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,262 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,263 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,264 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,265 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,266 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,267 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,268 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,269 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,270 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: AbstractBean
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Account
2024-09-04 10:53:16 02:53:16,271 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: DatasetFileDescriptors
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Dataset_Contributors
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Execution
2024-09-04 10:53:16 02:53:16,272 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionDatasets
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionParameters
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionProperties
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepEnd
2024-09-04 10:53:16 02:53:16,273 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepQueued
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepStart
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ExecutionStepState
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: FileDescriptor
2024-09-04 10:53:16 02:53:16,274 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: HPCJobInfo
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: LogFile
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Person
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission
2024-09-04 10:53:16 02:53:16,275 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_datasets
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Submission_parameters
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: ToolBlobs
2024-09-04 10:53:16 02:53:16,276 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: Workflow
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowContributors
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStep
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepInputs
2024-09-04 10:53:16 02:53:16,277 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepOutputs
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowStepParameters
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowSteps
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowTool
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolContributors
2024-09-04 10:53:16 02:53:16,278 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolData
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolInputs
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolOutputs
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter
2024-09-04 10:53:16 02:53:16,279 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameter_options
2024-09-04 10:53:16 02:53:16,280 [main]  INFO                          java.sql.DatabaseMetaData: 147 - HHH000262: Table not found: WorkflowToolParameters
2024-09-04 10:53:16 02:53:16,293 [main]  INFO            org.hibernate.tool.hbm2ddl.SchemaUpdate: 242 - HHH000232: Schema update complete
2024-09-04 10:53:16 2024-09-04 02:53:16.327:INFO:oejsh.ContextHandler:main: Started o.e.j.w.WebAppContext@4d591d15{/datawolf,file:/tmp/jetty-0.0.0.0-8888-datawolf-webapp-all-4.7.0-SNAPSHOT.war-_datawolf-any-3987590102281174189.dir/webapp/,AVAILABLE}{/home/datawolf/lib/datawolf-webapp-all-4.7.0-SNAPSHOT.war}
2024-09-04 10:53:16 2024-09-04 02:53:16.405:INFO:oejsh.ContextHandler:main: Started o.e.j.w.WebAppContext@7b1d7fff{/datawolf/editor,file:/tmp/jetty-0.0.0.0-8888-datawolf-editor-4.7.0-SNAPSHOT.war-_datawolf_editor-any-2035005524036321924.dir/webapp/,AVAILABLE}{/home/datawolf/lib/datawolf-editor-4.7.0-SNAPSHOT.war}
2024-09-04 10:53:16 2024-09-04 02:53:16.406:WARN:oejsh.RequestLogHandler:main: !RequestLog
2024-09-04 10:53:16 2024-09-04 02:53:16.443:INFO:oejs.ServerConnector:main: Started ServerConnector@33d53216{HTTP/1.1}{0.0.0.0:8888}
2024-09-04 10:53:16 2024-09-04 02:53:16.444:INFO:oejs.Server:main: Started @2476ms

These tables are created automatically. We can use the latest, we just have to update the tag to pull in the java 8 version of the library wherever it's referenced.

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