Rebuild 100k sample #78
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| name: Rebuild 100k sample | |
| on: | |
| # cron job once a week on Mondays at 12:42 UTC | |
| schedule: | |
| - cron: '42 12 * * 1' | |
| # Manually triggered using GitHub's UI | |
| workflow_dispatch: | |
| jobs: | |
| gisaid: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: aws-batch | |
| run: | | |
| set -x | |
| declare -a config | |
| config+=(slack_token=$SLACK_TOKEN) | |
| nextstrain build \ | |
| --detach \ | |
| --cpus 16 \ | |
| --memory 31GiB \ | |
| . \ | |
| upload \ | |
| --configfile nextstrain_profiles/100k/config-gisaid.yaml \ | |
| --config "${config[@]}" \ | |
| --set-threads tree=8 | |
| artifact-name: gisaid-build-output | |
| open: | |
| permissions: | |
| id-token: write | |
| uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master | |
| secrets: inherit | |
| with: | |
| runtime: aws-batch | |
| run: | | |
| set -x | |
| declare -a config | |
| config+=(slack_token=$SLACK_TOKEN) | |
| nextstrain build \ | |
| --detach \ | |
| --cpus 16 \ | |
| --memory 31GiB \ | |
| . \ | |
| upload \ | |
| --configfile nextstrain_profiles/100k/config-open.yaml \ | |
| --config "${config[@]}" \ | |
| --set-threads tree=8 | |
| artifact-name: open-build-output |