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Merge pull request #1147: Update output text for Augur 25.3.0
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victorlin committed Aug 22, 2024
2 parents e69c37e + f9a7f74 commit 408eef1
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2 changes: 1 addition & 1 deletion tests/sanitize-metadata.t
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Expand Up @@ -41,7 +41,7 @@ Throw an error when metadata doesn't have any of the requested strain id columns
> --metadata-id-columns strain \
> --database-id-columns gisaid_epi_isl genbank_accession \
> --output "$TMP/metadata.tsv"
ERROR: None of the possible id columns (['strain']) were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl')
ERROR: None of the possible id columns ('strain') were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl')
[1]

Print a warning when metadata doesn't have any of the requested database id columns.
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