Version nextalign binary for transition

Parallels "Version nextclade binary for transition" (8cf76ae).
nextstrain · Jan 17, 2024 · e982fbb · e982fbb
1 parent f79bb86
commit e982fbb
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/snakemake_rules/main_workflow.smk b/workflow/snakemake_rules/main_workflow.smk
@@ -92,7 +92,7 @@ rule align:
             --sequences {input.sequences} \
             --strip-prefixes {params.strain_prefixes:q} \
             --output /dev/stdout 2> {params.sanitize_log} \
-            | nextalign run \
+            | nextalign2 run \
             --jobs={threads} \
             --reference {input.reference} \
             --genemap {input.genemap} \