Merge pull request #2023 from obophenotype/2020_NTR_lung_macrophage

Addresses #2020 NTR alveolar macrophages
obophenotype · Jun 20, 2023 · 71fee88 · 71fee88
2 parents 18ae9b5 + d911a0d
commit 71fee88
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Showing 4 changed files with 695 additions and 294 deletions.
diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl
@@ -2977,6 +2977,9 @@ Declaration(Class(obo:CL_4033037))
 Declaration(Class(obo:CL_4033038))
 Declaration(Class(obo:CL_4033039))
 Declaration(Class(obo:CL_4033040))
+Declaration(Class(obo:CL_4033041))
+Declaration(Class(obo:CL_4033042))
+Declaration(Class(obo:CL_4033043))
 Declaration(Class(obo:CL_4033049))
 Declaration(Class(obo:CL_4033050))
 Declaration(Class(obo:CL_4040000))
@@ -3020,6 +3023,7 @@ Declaration(Class(obo:PR_000001224))
 Declaration(Class(obo:PR_000001243))
 Declaration(Class(obo:PR_000001244))
 Declaration(Class(obo:PR_000002030))
+Declaration(Class(obo:PR_000002123))
 Declaration(Class(obo:PR_000003264))
 Declaration(Class(obo:PR_000005444))
 Declaration(Class(obo:PR_000005460))
@@ -31564,6 +31568,39 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:27776108") oboInOwl:hasE
 AnnotationAssertion(rdfs:label obo:CL_4033040 "lung resident memory CD8-positive, CD103-positive, alpha-beta T cell")
 EquivalentClasses(obo:CL_4033040 ObjectIntersectionOf(obo:CL_4033039 ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001010)))
 
+# Class: obo:CL_4033041 (CCL3-positive alveolar macrophage)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37291214") obo:IAO_0000115 obo:CL_4033041 "An alveolar macrophage that expresses CCL3.")
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033041 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033041 <https://orcid.org/0000-0002-9185-3994>)
+AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033041 "2023-06-15T12:53:08Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37291214") oboInOwl:hasExactSynonym obo:CL_4033041 "alveolar macrophage CCL3-positive")
+AnnotationAssertion(rdfs:label obo:CL_4033041 "CCL3-positive alveolar macrophage")
+SubClassOf(obo:CL_4033041 obo:CL_0000583)
+SubClassOf(obo:CL_4033041 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000002123))
+
+# Class: obo:CL_4033042 (metallothionein-positive alveolar macrophage)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37291214") obo:IAO_0000115 obo:CL_4033042 "An alveolar macrophage that expresses metallothionein.")
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033042 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033042 <https://orcid.org/0000-0002-9185-3994>)
+AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033042 "2023-06-15T12:55:34Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37291214") oboInOwl:hasExactSynonym obo:CL_4033042 "alveolar macrophage MT-positive")
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:37291214") oboInOwl:hasExactSynonym obo:CL_4033042 "alveolar macrophage metallothionein-positive")
+AnnotationAssertion(rdfs:label obo:CL_4033042 "metallothionein-positive alveolar macrophage")
+SubClassOf(obo:CL_4033042 obo:CL_0000583)
+
+# Class: obo:CL_4033043 (lung interstitial macrophage)
+
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33382972") Annotation(oboInOwl:hasDbXref "PMID:35017701") Annotation(oboInOwl:hasDbXref "PMID:36211428") obo:IAO_0000115 obo:CL_4033043 "A macrophage that is part of the lung connective tissue (pulmonary interstitium). This cell performs tissue remodeling and contributes to barrier immunity through antigen presentation.")
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033043 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033043 <https://orcid.org/0000-0002-9185-3994>)
+AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033043 "2023-06-15T12:58:11Z"^^xsd:dateTime)
+AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:36211428") Annotation(oboInOwl:hasSynonymType <http://purl.obolibrary.org/obo/cl#abbreviation>) oboInOwl:hasRelatedSynonym obo:CL_4033043 "lung IM")
+AnnotationAssertion(rdfs:label obo:CL_4033043 "lung interstitial macrophage")
+SubClassOf(obo:CL_4033043 obo:CL_0000235)
+SubClassOf(obo:CL_4033043 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000114))
+
 # Class: obo:CL_4033049 (taste receptor cell of tongue)
 
 AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOI:10.1111/j.1096-3642.1981.tb01137.x") Annotation(oboInOwl:hasDbXref "PMID:10052456") Annotation(oboInOwl:hasDbXref "PMID:28655883") Annotation(oboInOwl:hasDbXref "http://www.nejohnston.org/Birds/documents/AvianTongues_Johnston.pdf") obo:IAO_0000115 obo:CL_4033049 "A taste receptor cell that is part of a taste bud of a tongue.")