NTR-substantia-nigra-dopaminergic-neuron-for-Basal-Ganglia-BICAN #2566
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terms added: substantia nigra dopaminergic neuron
AvolaAmg
changed the title
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I guess not quite ready for review as lacks classification and location.
NOTE - clashing ID with https://github.com/obophenotype/cell-ontology/pull/2569/files
| @@ -32378,6 +32380,15 @@ SubClassOf(obo:CL_4042022 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000101 | |||
| SubClassOf(obo:CL_4042022 ObjectSomeValuesFrom(obo:RO_0002203 obo:CL_0000127)) | |||
| SubClassOf(obo:CL_4042022 ObjectSomeValuesFrom(obo:RO_0002292 obo:PR_000001307)) | |||
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| # Class: obo:CL_4042023 (substantia nigra dopaminergic neuron) | |||
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will be resolved as the branch is merged.
| AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:32826893") oboInOwl:hasBroadSynonym obo:CL_4042023 "DaN") | ||
| AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35308118") oboInOwl:hasNarrowSynonym obo:CL_4042023 "SNpc dopaminergic neuron") | ||
| AnnotationAssertion(rdfs:label obo:CL_4042023 "substantia nigra dopaminergic neuron"@en) | ||
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Classification, location etc still needed
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Could you be more specific?
the definition includes:
A midbrain dopaminergic neuron that has its soma located in a substantia nigra . This dopaminergic neuron type is highly metabolically active and it is involved in the regulation of movement, cognition, motivation and reward. Neurodegeneration of this dopaminergic neuronal type causes loss in fine motor control in Parkinson's Disease.
for classification see the most recent commit.
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Looks good, but please split into two subCLassOf axioms. This is semantically identical, but some pipelines don't work well with subclassof X AND Y constructions.
| AnnotationAssertion(Annotation(oboInOwl:SynonymTypeProperty obo:OMO_0003000) Annotation(oboInOwl:hasDbXref "PMID:32826893") oboInOwl:hasBroadSynonym obo:CL_4042023 "DaN") | ||
| AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35308118") oboInOwl:hasNarrowSynonym obo:CL_4042023 "SNpc dopaminergic neuron") | ||
| AnnotationAssertion(rdfs:label obo:CL_4042023 "substantia nigra dopaminergic neuron"@en) | ||
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There was a problem hiding this comment.
Looks good, but please split into two subCLassOf axioms. This is semantically identical, but some pipelines don't work well with subclassof X AND Y constructions.
terms added: substantia nigra dopaminergic neuron