Fixes #2578 -NTR- fibroblastic reticular cell #2581
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Caroline-99
commented
Sep 19, 2024
Caroline-99
commented
- Added a new term
- Added textual and logical definition with extended description
- Added synonyms
- Added references
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#gogoeditdiff |
Here's a diff of how these changes impact the classified ontology (on -simple file):Ontology comparisonLeft
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Ontology importsOntology annotationsintestinal fibroblastic reticular cell
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Here's a diff of your edit file (unreasoned)Ontology comparisonLeft
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Ontology importsOntology annotationsintestinal fibroblastic reticular cell
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| @@ -32470,6 +32471,20 @@ AnnotationAssertion(rdfs:label obo:CL_4052003 "intestinal villus capillary endot | |||
| EquivalentClasses(obo:CL_4052003 ObjectIntersectionOf(obo:CL_0002144 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001213))) | |||
| SubClassOf(obo:CL_4052003 ObjectSomeValuesFrom(obo:RO_0000053 obo:PATO_0002064)) | |||
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| # Class: obo:CL_4052004 (intestinal fibroblastic reticular cell) | |||
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| AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:33707780") Annotation(oboInOwl:hasDbXref "doi:/10.1038/s41467-022-29734-2") obo:IAO_0000115 obo:CL_4052004 "A specialized fibroblastic reticular cell that is part of gut-associated lymphoid tissues(GALT), responsible for forming a structural network that facilitates immune cell interactions. This cell is found in Peyer's patches, cryptopatches, and isolated lymphoid follicles. It plays crucial roles in maintaining intestinal immunity by controlling innate lymphoid cell homeostasis and function, organizing lymphoid structures, and contributing to intestinal microbiome balance.") | |||
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Please remove other terms abbreviations (GALT) (it is also lacking an space). Also, I would use the singular form for the tissue.
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I agree that abbreviations should not be used on there own, but I don't see a problem with including the abbreviation in brackets after the full terms. The vast majority of the literature uses GALT, so I think important for users to see this.
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I don't think we currently have a guideline about including other term abbreviations in the definition, and if we want to add them we should include this in the document. Personally, I think that other terms abbreviations and definitions should be restricted to those terms, but overall I want cohesion on the style so if it is more helpful to include them I don't have a problem as long as it is in the guidelines.
