org.opentest4j.AssertionFailedError: Saved miseq run should have seqence file ==> expected: <true> but was: <false>

java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`qc_entry`, CONSTRAINT `FK_SEQOBJECT_QC_ENTRY` FOREIGN KEY (`sequencingObject_id`) REFERENCES `sequencing_object` (`id`))

java.sql.SQLIntegrityConstraintViolationException: Cannot delete or update a parent row: a foreign key constraint fails (`irida_integration_test`.`analysis_submission`, CONSTRAINT `FK_ANALYIS_SUBMISSION_SUBMITTER_ID` FOREIGN KEY (`submitter`) REFERENCES `user` (`id`))

Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

Singleton bean creation not allowed while singletons of this factory are in destruction (Do not request a bean from a BeanFactory in a destroy method implementation!)

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 29/1/testReference476150086908169106.fasta does not exist

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 30/1/testReference471098489540088112.fasta does not exist

java.util.concurrent.ExecutionException: java.lang.IllegalStateException: path 32/1/testReference2007218268228171616.fasta does not exist

org.opentest4j.AssertionFailedError: expected: <http://127.0.0.1:35573/irida/login?ldap-error=6> but was: <http://127.0.0.1:35573/irida/login?error=true>

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Output File Preview'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "1" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for visibility of element located by By.cssSelector: span[title='Provenance'] (tried for 10 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.openqa.selenium.NoSuchElementException: no such element: Unable to locate element: {"method":"css selector","selector":"span[title='Samples']"} (Session info: chrome-headless-shell=121.0.6167.160) For documentation on this error, please visit: https://selenium.dev/exceptions/#no_such_element Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Command: [b3084a0ff266fd63ab7d318cde07a919, findChildElement {id=BF9C66EEA6F5F7E1B4EBA55E3178317F_element_2520, using=css selector, value=span[title='Samples']}] Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.opentest4j.AssertionFailedError: There should be one output file ==> expected: <1> but was: <0>

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.openqa.selenium.TimeoutException: Expected condition failed: waiting for number of elements found by By.className: ant-page-header-heading-title to be "2". Current number: "0" (tried for 2 second(s) with 500 milliseconds interval) Build info: version: '4.1.4', revision: '535d840ee2' System info: host: 'fv-az1496-998', ip: '10.1.0.32', os.name: 'Linux', os.arch: 'amd64', os.version: '5.15.0-1054-azure', java.version: '11.0.22' Driver info: org.openqa.selenium.chrome.ChromeDriver Capabilities {acceptInsecureCerts: false, browserName: chrome-headless-shell, browserVersion: 121.0.6167.160, chrome: {chromedriverVersion: 121.0.6167.85 (3f98d690ad7e..., userDataDir: /tmp/.org.chromium.Chromium...}, fedcm:accounts: true, goog:chromeOptions: {debuggerAddress: localhost:39599}, javascriptEnabled: true, networkConnectionEnabled: false, pageLoadStrategy: normal, platform: LINUX, platformName: LINUX, proxy: Proxy(), se:cdp: ws://localhost:39599/devtoo..., se:cdpVersion: 121.0.6167.160, setWindowRect: true, strictFileInteractability: false, timeouts: {implicit: 0, pageLoad: 300000, script: 30000}, unhandledPromptBehavior: dismiss and notify, webauthn:extension:credBlob: true, webauthn:extension:largeBlob: true, webauthn:extension:minPinLength: true, webauthn:extension:prf: true, webauthn:virtualAuthenticators: true} Session ID: b3084a0ff266fd63ab7d318cde07a919

org.opentest4j.AssertionFailedError: The correct details are displayed for the analysis ==> expected: <true> but was: <false>

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-ruby@v1, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-ruby@v1, actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, actions/cache@v3, actions/setup-java@v1, gradle/wrapper-validation-action@v1, gradle/gradle-build-action@v2, mikepenz/action-junit-report@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/setup-java@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/