0.12.1

• [UI]: Fixed bug where sample edit button wouldn't show up when users had permission (0.12.1)
• [UI]: Fixed bug where announcements couldn't be marked as read (0.12.1)
• [UI]: Changed the user icon in recent events to a basic icon instead of a gravatar (0.12.1)

0.12.0

0.11.0 to 0.12.0

• [UI]: Removed bootstrap tooltip and extra script from dashboard page.
• [UI]: Remove bower dependency for angular-notification-icons.
• [UI]: Remove bower dependency for AngularJS-toaster.
• [UI]: Removed qTip2 dependency.
• [UI]: Removed bower dependency for bootstrap-sass-official.
• [UI]: Remove bower dependency for 'MagnificPopup'.
• [UI]: Removed client side dependency on angular-gravatar and replace with server gravatar url creation.
• [UI]: Fix issue with Dandelion filters throwing nullpointerexceptions (0.11.4)
• [Developer]: Added FetchMode.SELECT to SequenceFilePair.files as Hibernate was including the children multiple times in the result set. (0.11.1)
• [Developer]: Packer now waits for tomcat to start during the build so that the database is fully deployed before distribution.
• [Developer]: Packer renames the VM on output.
• [Developer]: The Virtualbox appliance that's built now uses the virtio network adapter because the Intel one had serious performance issues over NAT.
• [UI]: FastQC images were not rendering in Firefox because the request behaviour changed. (0.11.2)
• [UI]: Fixed a permissions issue with reading NCBI submissions. (0.11.3)
• [Developer]: Paths in the database (for sequence files, output files, references, remote) are stored as relative paths instead of absolute. This will make it easier to migrate filesystems in the future.
• [UI]: Implemented a project synchronization feature to pull remote samples and data from other IRIDA installations.
• [Developer]: Added FastQC metrics to the REST API
• [Workflow]: Upgraded SNVPhyl from 0.3 to 1.0.

0.11.4

Fix issue with Dandelion filters throwing nullpointerexceptions (0.11.4)

0.11.3

• [UI]: Fixed a permissions issue with reading NCBI submissions. (0.11.3)

0.11.2

• [UI]: FastQC images were not rendering in Firefox because the request behaviour changed. (0.11.2)

0.11.1

• [Developer]: Added FetchMode.SELECT to SequenceFilePair.files as Hibernate was including the children multiple times in the result set. (0.11.1)

0.11.0

1.0.0 to 0.11.0

• [UI]: Fixed issue were login page was being displayed even though the user was logged in.
• [UI]: Full analysis name is now displayed in table
• [UI]: Added the project ID to all project specific pages.
• [UI]: Added the time to modified dates.
• [UI]: Fixed issue with IE11 caching ajax calls.
• [UI]: Samples in the cart are now sorted by created date.
• [UI]: Fixed a bug where exporting to Galaxy from the cart was not working.
• [Database] Fixed an issue with migrating single end sequence files to the new SequencingObject model in cases where samples with single files had been merged. IRIDA installs should skip directly to v1.0.2 from 1.0.0alpha-10 to avoid database update problems. (1.0.2)
• [Developer]: Added a complete docker image for Galaxy, updated the VirtualBox appliance to use the Docker image.
• [UI]: Fixed a bug when the launch pipeline page was opened on a small display (<1000px) the "Launch Pipeline" button disappeared.
• [Developer]: Added support for a wider variety of naming patters when pairing uploaded sequence files.
• [UI]: Fixed a bug where the hashCode method on SequenceFilePair was only using the date the pair was created, causing Sets of pairs to be much smaller than expected. (1.0.3)
• [UI]: Fixed a UI bug in Internet Explorer 11 where the IRIDA logo and the Projects menu were overlapping.
• [Developer]: Fixed a couple of broken links in documentation.
• [Developer]: Re-fixed the hashCode bug so that the files collection is a List instead of a Set. The Set was throwing a NullPointerException from Hibernate. (1.0.4)
• [UI]: Displaying the modification time of samples in the project/samples table.
• [UI]: Refactored Sequencing Runs list to use dandelion datatables.
• [UI]: Fixed a bug where groups on a project with manager role were not allowed to behave like a manager. (1.0.5)
• [UI]: Added a project event for removing samples from a project.
• [UI]: Updated NCBI SRA uploader UI to be easier to prepare large numbers of samples.
• [Developer]: Dropped version down to a slightly lower number.

1.0.5: Fix a bug where user groups on a project with manager permission were…

• [UI]: Fixed a bug where groups on a project with manager role were not allowed to behave like a manager.

1.0.4

• [Developer]: Re-fixed the hashCode bug so that the files collection is a List instead of a Set. The Set was throwing a NullPointerException from Hibernate.

1.0.3

UI: Fixed a bug where the hashCode method on SequenceFilePair was only using the date the pair was created, causing Sets of pairs to be much smaller than expected.